Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h08
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   0.63 
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   1.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    24   7.8  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.9 bits (59), Expect = 0.63
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 253  LNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLFV 152
            L+ FSQ FH F+     L +  HL  L + LLF+
Sbjct: 1016 LSKFSQKFHGFLILHDNLKDHIHLEELWLNLLFL 1049


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 265 QWIQLNVFSQNFHIFIFYEQFLDNQGHLNNLRIILLF 155
           Q ++L+     F + +FY+   DN G LNN  +  LF
Sbjct: 297 QIVELSPKGYRFLVDLFYQFDRDNDGALNNEELSALF 333


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 62  ISETSKLTTMCWLGWAVAMSLFSY--IFLSPNHK 157
           +S +   T  C + W    SLF+Y  I +S NH+
Sbjct: 315 VSTSDPYTLACLVSWRDNASLFNYAAIIISFNHQ 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,191
Number of Sequences: 5004
Number of extensions: 25267
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)