Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h04
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    28   1.1  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    26   4.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   5.6  

>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = -1

Query: 251 WKDTTLAIH*FYRCLTSVRTNLVVVIYLALNQRYDDRKSNIFRIQRLIKHLKIVYANLIF 72
           +K + L+   F  C+ S +  L+  I+  ++  +          Q + + LK  Y N+I 
Sbjct: 282 FKKSALSEPDFRICVVSSQDTLLPTIF-EIDALFSSTPLRQNMPQHMFQRLKEGYRNIII 340

Query: 71  *ISEY*LVSYVPTSD 27
            I +Y ++SY+  SD
Sbjct: 341 AIVDYGVISYIRLSD 355


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 364 QWSHPVTAFLTKPPISFLTKFISAIPP 284
           +W+ P  +FLT  P+S    +    PP
Sbjct: 234 RWNDPAASFLTNKPVSSKATYQGYAPP 260


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 135 TLSVIVSLVQGQIDDDYQIRPDRCQAPIELMYRQCCIFPPFFTRTIAR 278
           T S  ++++ G I +D ++ P      IELM    C+FP  F   + R
Sbjct: 336 TYSDWINVLLGSISEDPELLPHL----IELMASLACVFPTHFQFAMKR 379


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +3

Query: 231 RQCCIFPPFFTRTIARSCGGIADMNFVKNDIGGFVRKAVTGCDHWRCILKKYNFLTPNGL 410
           RQ  + P   T     S   + ++  V+    G V + +        +LK   FL    L
Sbjct: 246 RQSSLIPDLITMKNTSSSYSLEELTSVQQM--GLVYEKIVFPSRIAAVLKSKLFLIFLFL 303

Query: 411 LDDDKYYAHLDKWTEL 458
            + + YY+ LD+W  +
Sbjct: 304 KNKNVYYSRLDEWLHI 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,588
Number of Sequences: 5004
Number of extensions: 42021
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)