Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h04
         (551 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2525|ABC66137.1|  279|Drosophila melanogaster CG33986-P...    29   3.2  
AY075545-1|AAL68352.1|  384|Drosophila melanogaster RH43215p pro...    28   9.7  
AE014296-2390|AAF49732.1|  384|Drosophila melanogaster CG9238-PB...    28   9.7  

>AE014296-2525|ABC66137.1|  279|Drosophila melanogaster CG33986-PA
           protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = +3

Query: 441 DKWTELNSAFK---TVILNAKVHCKLNYQHLFP-MEPCEFY 551
           D  T  NS F    T I +  +HC    QHL+P M+ CEF+
Sbjct: 194 DMPTNGNSGFPSGGTAISSDLIHCPAYGQHLYPHMQRCEFF 234


>AY075545-1|AAL68352.1|  384|Drosophila melanogaster RH43215p
           protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 358 SHPVTAFLTKPPISFLTKFISAIPPQLL 275
           SH    F   PP+SFL  F+S  P Q L
Sbjct: 3   SHSPPIFSHSPPVSFLADFMSGHPRQSL 30


>AE014296-2390|AAF49732.1|  384|Drosophila melanogaster CG9238-PB,
           isoform B protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 358 SHPVTAFLTKPPISFLTKFISAIPPQLL 275
           SH    F   PP+SFL  F+S  P Q L
Sbjct: 3   SHSPPIFSHSPPVSFLADFMSGHPRQSL 30


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,894,091
Number of Sequences: 53049
Number of extensions: 427289
Number of successful extensions: 754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2110522698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)