Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h03
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   8.5  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.5  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 325 SLMNNSNIRDTAKLLHTSGDSLSNLI*RRTYYRAQEN 435
           S  N S +  +AKL     D LSNL+  +   ++Q+N
Sbjct: 419 STSNYSKVPLSAKLTGEKSDDLSNLLKNKGKKKSQDN 455


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 229 FIMNLKIKAESFKQFLLSSTRDVCTA-HHKWFLSLMNNSNI 348
           ++ N K K  S  ++LLSS RDV  A  H   L  +N  ++
Sbjct: 487 YLKNYK-KNTSISEYLLSSQRDVMLAVEHSLLLLYLNMDDL 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,885
Number of Sequences: 5004
Number of extensions: 39772
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)