Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24h02
         (202 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical pr...    26   3.2  

>AF022974-9|AAC48035.3|  566|Caenorhabditis elegans Hypothetical
           protein F26G5.1 protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 147 PPAEHSYNELPILRN*K 197
           PPA+HS  ELP+L++ K
Sbjct: 111 PPADHSNKELPLLKSSK 127


>Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical
           protein K03D3.12 protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 201 FFFNFLKLVVHYMNVLLVVNFDIIQLMMGDLKKIS*F 91
           FFF  L  ++  + V++V  FDI+ L+    K +S F
Sbjct: 93  FFFKLLNFLIGCVLVIIVQAFDIVVLLFAIEKWLSIF 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,843
Number of Sequences: 27780
Number of extensions: 37945
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)