Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24g23
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 178 PSEIIQSTIYTCLIVLFFSGIKLGFLFDELLTYFN 74
           PS    S   T L    ++GI   F+FD+L  Y N
Sbjct: 96  PSSFFSSVSPTSLGSENYTGISDLFVFDDLNDYIN 130


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 259 FRAVYWLFSVL 291
           F A+YW+F VL
Sbjct: 479 FNAIYWIFYVL 489


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 339 MTKWYVGAKNLLS 301
           +T WY+G K +LS
Sbjct: 671 VTNWYMGWKGMLS 683


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 549 YPLSPSKDAIFV 584
           Y +SPS DA+FV
Sbjct: 858 YMVSPSNDALFV 869


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 80  FQWKLNLVKNTKSKYCTLFLTSL 12
           F WK   + + ++  C  FLT++
Sbjct: 419 FDWKQVALVSDRALLCVFFLTTI 441


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 157 TIYTCLIVLFFSGIKLGFLFDELLTYFN 74
           T  TC++  F  G+    ++  LLT  N
Sbjct: 576 TTVTCILQRFGVGVSFSAVYGALLTKTN 603


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 537 FPPDYPLSPSK 569
           +PP++PLS SK
Sbjct: 97  YPPNHPLSGSK 107


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 537 FPPDYPLSPSK 569
           +PP++PLS SK
Sbjct: 97  YPPNHPLSGSK 107


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 157 TIYTCLIVLFFSGIKLGFLFDELLTYFN 74
           T  TC++  F  G+    ++  LLT  N
Sbjct: 666 TTVTCILQRFGVGVSFSAVYGALLTKTN 693


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,021
Number of Sequences: 438
Number of extensions: 4020
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)