Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24g14
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 79 2e-16
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 27 0.78
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 1.0
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.4
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 1.8
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 24 5.5
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 24 5.5
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 24 7.3
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 24 7.3
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 24 7.3
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 23 9.6
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 23 9.6
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 23 9.6
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 78.6 bits (185), Expect = 2e-16
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 RYPFQNQTRACYDNYCDYFKCTRLLGE-VDDCKIFKRYYETICPNYWISHWDEQREKGIF 283
R+P NQT+ C+ +Y DYF+C + GE CK F Y+++CP W+ WDEQRE G F
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 284 PGPI 295
P PI
Sbjct: 80 PAPI 83
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 0.78
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 48 RI*IFLQCAIKNLELCVSTRGTL-SRTKPGRVTI--TTVIISNAPVSSA--KLMIAKYSR 212
R+ LQC +K+ +LC+ TL S K + + T+ II+ P A L A Y+
Sbjct: 148 RVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLYYTSFIINEFPFEQAFEILSNALYAL 207
Query: 213 DITKLY 230
D + Y
Sbjct: 208 DNVQTY 213
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 1.0
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +2
Query: 8 KLKFIVCYHYIRDK-NLD-FFTMCDQEFRTLRIDPRYPFQNQTRACYDNYCDYFKCTRLL 181
KL+ + YH DK N D +C R L P + F + RA +Y +L
Sbjct: 349 KLRALQYYHLANDKGNADAMLALCKLYLRGL---PGHIFPSSRRAF-----EYAHRAAML 400
Query: 182 GEVDDCKIFKRYYET 226
G C + ++YET
Sbjct: 401 GHAPACYVLGKFYET 415
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 1.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 301 QLNRSWENALLTLFIPMRDPIIRAYS 224
QL RSW + F+P P++RA S
Sbjct: 453 QLPRSWAIYVREAFVPQNHPVLRAPS 478
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 140 YDNYCDYFKCTRLLGEVDDCKIFK 211
+D Y D F+C ++ E DC +++
Sbjct: 100 FDLYIDQFRCLHIVMEFLDCNLYQ 123
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 24.2 bits (50), Expect = 5.5
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 188 LRRGDGCI*NNHSSYRNTPWFGS 120
LR+GD I N SS PW S
Sbjct: 335 LRKGDTVIATNFSSVSGMPWIKS 357
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 24.2 bits (50), Expect = 5.5
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 88 NFAYRPAVPFPEPNQGVLR*LL*LFQMHPSPRRS**LQNIQEILRNY 228
++ Y P + P G+ R L F + P P ++ L N++ I++++
Sbjct: 209 DYGYSPLINTGNPTSGLKRKALKQFPLPPDPCQA--LANLRPIVKSF 253
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 23.8 bits (49), Expect = 7.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 179 LGEVDDCKIFKRYYETICPNYWISHWDEQ 265
LGE ++ + Y + N +HWDE+
Sbjct: 615 LGETEEAEKLAGYENAMLRNLEDNHWDEE 643
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 23.8 bits (49), Expect = 7.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = +2
Query: 227 ICPNYWISHWDEQREK 274
+ N W+ HW E+ K
Sbjct: 918 VATNVWLKHWSEENGK 933
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 99 STRGTLSRTKPGRVTITTVIISNAPVSSAKLMIAKYS 209
S GT+ +P T+TT + S + V + L A S
Sbjct: 817 SVTGTVEVVEPAAGTVTTTVYSGSEVYTTTLASASES 853
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 283 ENALLTLFIPMR-DPIIRAYSFVISLEYFAI 194
EN + +F + DP +R+ F +++ YF +
Sbjct: 178 ENCVRLIFFGRKYDPFLRSRMFTLTIRYFLL 208
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 290 VLGKCPSHAVHPNERSNN 237
V G C VHPNE+ N+
Sbjct: 213 VAGDCKITLVHPNEQPNS 230
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 23.4 bits (48), Expect = 9.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2
Query: 233 PNYWISHWDEQ 265
PN W++ WDE+
Sbjct: 10 PNGWVAQWDER 20
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,204
Number of Sequences: 5004
Number of extensions: 29020
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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