Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24g14
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   5.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   7.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    20   7.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 203 IFKRYYETICPNYWISHW 256
           +F R +  IC    I HW
Sbjct: 275 VFMRIFNLICMMLLIGHW 292


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 203 IFKRYYETICPNYWISHW 256
           +F R +  IC    I HW
Sbjct: 243 VFMRIFNLICMMLLIGHW 260


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 LSRTKPGRVTITTVIISNAPVSSAKLMIAKYSRDITK 224
           + R  PG+ TITTV +    ++   +++ + + + +K
Sbjct: 124 IHRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSK 160


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 114 LSRTKPGRVTITTVIISNAPVSSAKLMIAKYSRDITK 224
           + R  PG+ TITTV +    ++   +++ + + + +K
Sbjct: 135 IRRDLPGKSTITTVEVKRDIINPEDVILIRRTGEGSK 171


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 8   KLKFIVCYHYIRDKNLDFFTMC 73
           KLK I    +I D  LD+   C
Sbjct: 48  KLKIIEILQFILDVRLDYRISC 69


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 8  KLKFIVCYHYIRDKNLDFFTMC 73
          KLK I    +I D  LD+   C
Sbjct: 16 KLKIIEILQFILDVRLDYRISC 37


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 135 ALVWFWKGYRGSIRK 91
           A+ + WK   G++RK
Sbjct: 213 AITYVWKNDEGTLRK 227


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 135 ALVWFWKGYRGSIRK 91
           A+ + WK   G++RK
Sbjct: 213 AITYVWKNDEGTLRK 227


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 135 ALVWFWKGYRGSIRK 91
           A+ + WK   G++RK
Sbjct: 264 AITYVWKNDEGTLRK 278


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 135 ALVWFWKGYRGSIRK 91
           A+ + WK   G++RK
Sbjct: 213 AITYVWKNDEGTLRK 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,734
Number of Sequences: 438
Number of extensions: 2175
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)