Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24g08
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 32 0.25
01_01_0735 + 5730783-5733320 30 1.0
01_03_0307 + 14879564-14879594,14880024-14880182,14880629-14881857 29 3.1
06_01_0859 - 6506029-6506133,6506255-6506319,6506461-6506539,650... 28 4.1
06_02_0036 - 10844876-10846173,10846490-10847012 28 5.4
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 7.1
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 27 7.1
07_03_0394 - 17633753-17636788 27 7.1
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 27 7.1
01_05_0645 - 23899579-23904483 27 7.1
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 9.4
07_03_0608 - 19924065-19924367,19924517-19924704,19924791-199252... 27 9.4
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 32.3 bits (70), Expect = 0.25
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 193 SDIVGFPIVVDDELSLEKVIDFNLVDYIEKFETISEAATKENNLEKALDKMMK 351
SD+ F +VV + L+ +K ++F+ ++ + +A KEN LE+ LD +K
Sbjct: 632 SDVYSFGVVVLELLTRKKPLNFDGLEDEKSLSVRFLSAVKENKLEEILDDQIK 684
>01_01_0735 + 5730783-5733320
Length = 845
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +1
Query: 154 GNPGMKPRHW------EKISDIVGFPIVVDDELSLEKVIDFNLVDYIEKFETISEAATKE 315
G PG W EK+ D+ F +VV + +S K ID++ + + T+ + K+
Sbjct: 695 GTPGYMAPEWLTSQITEKV-DVYSFGVVVMEIISGRKNIDYSQSEENVQLITLLQEKAKK 753
Query: 316 NNLEKALDKMMKEWADLKFDILPYKDTGTYILSS 417
LE +DK E K +++ + L S
Sbjct: 754 GQLEDLVDKNSDEMHLHKEEVIEVMKLAMWCLQS 787
>01_03_0307 + 14879564-14879594,14880024-14880182,14880629-14881857
Length = 472
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 193 SDIVGFPIVVDDELSLEKVIDFNLVDYIEKFETISEAATKENNLEKALDKMMKE 354
SD+ F +V+ + ++ + + F + + + A KENNLE LD +K+
Sbjct: 313 SDVYSFGVVLLEVMTGQMPLKFEGPEIQKSLSSSFLLAMKENNLEAMLDSQIKD 366
>06_01_0859 -
6506029-6506133,6506255-6506319,6506461-6506539,
6506764-6506893,6507231-6507396,6507515-6507569,
6507693-6507739,6508416-6508614
Length = 281
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 190 ISDIVGFPIVVDDELSLEKVIDFNLVDYIEKFETISEAATKENNLEKALDKMMKEWADLK 369
+++++G+ D+L +E+ + V I F+ SEA ++N K + K + W D+
Sbjct: 114 LAEVLGYSFFDSDKL-VEQAVGMPSVAQI--FKEHSEAFFRDNEAMKYMKKGLSVWLDVP 170
Query: 370 FDIL 381
D L
Sbjct: 171 LDAL 174
>06_02_0036 - 10844876-10846173,10846490-10847012
Length = 606
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 355 WADLKFDILPYKDTGTYILSSVDEIQL---LLDDHIVKTQTMKNSPYIKPFEDIIYDW 519
WA LK P++D TYIL + E++L +L DH + M Y+ D W
Sbjct: 178 WAGLKPWPPPHEDDLTYILVNQREVELWRTILVDHNKEGLLMIIELYVLDLNDCCLSW 235
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 274 IEKFETISEAATKENNLEKALDKMMKEWADLKFDILPYKDTGTYILSSVDEIQLLLDDHI 453
++ FETI + K LEK L ++ + LK DI K S+DE+ LD+
Sbjct: 579 LDTFETIQDPEEKRRVLEKFLSRVKTDKDKLKKDIQKSK------FLSIDEVFKRLDEQK 632
Query: 454 VKTQ 465
K +
Sbjct: 633 KKNE 636
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 274 IEKFETISEAATKENNLEKALDKMMKEWADLKFDILPYKDTGTYILSSVDEIQLLLDDHI 453
++ FETI + K LEK L ++ + LK DI K S+DE+ LD+
Sbjct: 898 LDTFETIQDPEEKRRVLEKFLSRVKTDKDKLKKDIQKSK------FLSIDEVFKRLDEQK 951
Query: 454 VKTQ 465
K +
Sbjct: 952 KKNE 955
>07_03_0394 - 17633753-17636788
Length = 1011
Score = 27.5 bits (58), Expect = 7.1
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +1
Query: 7 IEGDVGYFYKIVYKLEKSFQDVPETYRLAASVREKMDSFKTNLPIIQT-LGNPGMKPRHW 183
I G+ Y +V K++ F V + L MD + P ++ LGN MK RH+
Sbjct: 260 IPGEKAGAYDLVEKMQYLFVRVVKARDLP-----HMDITGSLDPYVEVHLGNYKMKTRHF 314
Query: 184 EK-----ISDIVGFPIVVDDELSLEKVI---DFNLVDYI 276
EK ++ FP V SLE ++ DF DY+
Sbjct: 315 EKNQRPEWDEVFAFPREVMQSTSLEVIVKDKDFIRDDYV 353
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 274 IEKFETISEAATKENNLEKALDKMMKEWADLKFDILPYKDTGTYILSSVDEIQLLLDDHI 453
++ FETI + K LEK L ++ + LK DI K S+DE+ LD+
Sbjct: 563 LDTFETIQDPEEKRRVLEKFLSRVKTDKDKLKKDIQKSK------FLSIDEVFKRLDEQK 616
Query: 454 VKTQ 465
K +
Sbjct: 617 KKNE 620
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 274 IEKFETISEAATKENNLEKALDKMMKEWADLKFDILPYKDTGTYILSSVDEIQLLLDDHI 453
++ FETI + K LEK L ++ + LK DI K S+DE+ LD+
Sbjct: 818 LDTFETIQDPEEKRRVLEKFLSRVKTDKDKLKKDIQKSK------FLSIDEVFKRLDEQK 871
Query: 454 VKTQ 465
K +
Sbjct: 872 KKNE 875
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 115 DSFKTNLPIIQTLGNPGMKPRHWEKISDIVGFPIVVDDELSLE 243
D+F + +I++LG H+ K D+ FP+++D + LE
Sbjct: 471 DNFTRKVNVIRSLGELTKDVLHYCKGEDLNEFPVLLDFSVFLE 513
>07_03_0608 -
19924065-19924367,19924517-19924704,19924791-19925229,
19925357-19925851
Length = 474
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 436 AIVFHLHLTKYKFPYLCKEEYRTSSQPIPSSSYP 335
++ H + ++++ CKE YR + P+P P
Sbjct: 432 SVAMHYLVRQFRWKLCCKEGYRKDATPMPVLGLP 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.138 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,532,600
Number of Sequences: 37544
Number of extensions: 300069
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -