Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24g07
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0675 + 35455968-35455970,35456314-35456379,35456513-354565... 224 4e-59
11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229 31 0.40
01_01_1202 - 9681836-9683146 29 1.6
08_02_0187 - 13978194-13979093,13980332-13980679 29 2.1
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 2.1
06_02_0189 - 12816751-12817088,12817272-12817330,12817745-128177... 27 6.5
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197... 27 8.6
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937... 27 8.6
>03_06_0675 +
35455968-35455970,35456314-35456379,35456513-35456565,
35457142-35457169,35457837-35457911,35458020-35458124,
35458278-35458367,35458454-35458543
Length = 169
Score = 224 bits (547), Expect = 4e-59
Identities = 105/154 (68%), Positives = 130/154 (84%)
Frame = +1
Query: 37 MAATLKPYLTAVRHTLTAAMCLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 216
MA TL+ YLT +R+TL AAMCL++F Q VE++ KPEVE++TS ELLLNPV+I RN EK
Sbjct: 1 MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60
Query: 217 VLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITN 396
LIE+SINSIR+S+ +KQADE+E IL KKF+RF+ MRAE F VLRRKPV GY ISFLITN
Sbjct: 61 CLIETSINSIRISMKVKQADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITN 120
Query: 397 FHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVN 498
+H E M+KHKL+DF++ FME+IDKEISE+KL+VN
Sbjct: 121 YHCEDMHKHKLIDFIVQFMEDIDKEISELKLSVN 154
>11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229
Length = 632
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +1
Query: 169 ELLLNPVVISRNSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMRFMMMRAENFIVL 348
+LLLNP++ S+ KVL+ S ++ ++ ++ ++E + F+ A + V+
Sbjct: 309 DLLLNPLLASQKGGSKVLVTSRSKTLPAALFCEEVIDLENMKDNDFLALFKHYAFSGAVI 368
Query: 349 RRKPVDG 369
R + G
Sbjct: 369 RDLQLHG 375
>01_01_1202 - 9681836-9683146
Length = 436
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 413 ICSVWKLVIKKLIWYPSTGFLLNTMKFSALIIM 315
+ +V V+ L +Y TGFL N M+FSA ++
Sbjct: 62 LVAVVTFVLVALYYYRCTGFLKNYMRFSAFFVL 94
>08_02_0187 - 13978194-13979093,13980332-13980679
Length = 415
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 202 NSNEKVLIESSINSIRVSIMIKQADEIEKILCKKFMR 312
N + VL+++ +NS V+ +K AD + KF++
Sbjct: 294 NDRDSVLLDTKVNSASVTATVKDADPLAVYAISKFLQ 330
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 76 HTLTAAM-CLEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNEK 216
H LT + C+E + +E++ E+R SK L +I ++S+EK
Sbjct: 1154 HILTTLLPCIEEGVASYIEEFENMAEEIRLSKICLQESNIIGQSSSEK 1201
>06_02_0189 -
12816751-12817088,12817272-12817330,12817745-12817773,
12817808-12818013,12818245-12818329
Length = 238
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/51 (19%), Positives = 25/51 (49%)
Frame = -3
Query: 396 VSNQKADMVPINWFPP*YNEVFSSHHHEPHKFFTKNFLYLIRLLDHNTHPN 244
+S+ D++ + W P N++ E +NF+ + ++H+ +P+
Sbjct: 163 ISSTSIDLIQVRWVPREVNKMADKLAKEAKSGTRRNFIQNCQNIEHSAYPH 213
>10_08_0426 -
17817975-17818582,17819068-17819209,17819648-17819745,
17820070-17821897,17822331-17822738,17822891-17822943,
17823461-17823877,17824401-17824605
Length = 1252
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 100 LEHFSSQVVEKYTKPEVEVRTSKELLLNPVVISRNSNE 213
L+HF ++ + Y + + V +SKELL P I+R+ +E
Sbjct: 845 LDHFMNRSLSPYYRSALSVISSKELL-RPPFINRDFHE 881
>01_05_0217 -
19390788-19391048,19392205-19392438,19393474-19393798,
19395781-19396121,19396422-19396502,19396640-19396759,
19397028-19397129,19397811-19397946,19398508-19398654,
19399024-19399337
Length = 686
Score = 27.1 bits (57), Expect = 8.6
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 277 EIEKILCKKFMRFMMMRAENFIVLRRK--PVDGYHISFLITNFHTEQMYKHKLVDFVIYF 450
EI + +F+ R + F VL R P I L+ +F H L V+Y
Sbjct: 178 EIVATMRLRFLASEKRRPDQFTVLVRNIPPDPDESIGELVEHFFLVNHPDHYLTHQVVYN 237
Query: 451 MEEIDKEISEMKLAVN 498
++DK + E K N
Sbjct: 238 ANKLDKMVKEKKKMQN 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,187,488
Number of Sequences: 37544
Number of extensions: 184291
Number of successful extensions: 412
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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