Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24g06
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.69 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.69 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    28   0.91 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   2.1  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   3.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   3.7  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    26   3.7  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   4.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.8  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   6.4  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   6.4  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   6.4  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   8.5  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   8.5  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -3

Query: 386 SCSVVGPTTSSPLGHSPAFLVSTC*VVPAAPASISWRREFASSCKVSMYSSESNCARRSA 207
           S S V  TTSS    SP+   +T    P++ +S S     +SS   S  SS S+ +  S+
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 187

Query: 206 IGDTS 192
              +S
Sbjct: 188 SSSSS 192


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 431 STSCLMSTTAPRLGSSCSVVGPTTSSPLGHSPAFLVSTC*VVPAAP 294
           STSC  ST+ P  G+S + V PT   P   S     + C    + P
Sbjct: 390 STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTPLTTTNCTTSTSVP 434



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 431 STSCLMSTTAPRLGSSCSVVGPT 363
           STSC  ST+ P  G+S + V PT
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPT 304



 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 431 STSCLMSTTAPRLGSSCSVVGPT 363
           STSC  ST+ P  G+S + V PT
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPT 358


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 31  ELESFEREVD*REHSATRSGGGAERPGW 114
           ELE+FE+E+   E S T++ G +++P +
Sbjct: 341 ELENFEKEIFKAEVSETKNNGNSDKPSF 368


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 463  PYTHAADLLEIKEENNDKGDIFYASCDEXND 555
            P+ H+  L +I+ E+  +GD+FY +  +  D
Sbjct: 1024 PHRHSVSLGQIRGESEVEGDVFYDAPSDKED 1054


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 412 DIKHDVDRILAQHSYAHPYTHAADLLEIKEENND 513
           D++ D   I+      HP+ HA  +  I  E++D
Sbjct: 307 DVQSDTSEIIENEPGMHPHVHAERMSRIASESSD 340


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 553 HYXRHSLRR--ICRLYRCSPL*FREGLLRVCRDEHKSVVPVSC 431
           H   HS  R  +C    CS   +R+  L++ +  H +V P SC
Sbjct: 43  HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSC 85


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 278 SKKLMQVLQERLNMSKPGKLESALKEMKWWGPQQNNWN 391
           ++++++ LQ+  +++ P  LE   K+ + W   QN+WN
Sbjct: 721 AQQIIENLQKNPSVTIPIVLERLKKKDREWRSLQNHWN 758


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 215 SSRNSIPRNTSTPYMNL----QTPSSKKLMQVLQERLN 316
           SS NSIP  TST Y+++     TPS      VL E LN
Sbjct: 2   SSVNSIPTATSTVYISVLPATATPSGGSGGNVLHEDLN 39


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 346 PKGDEVVGPTTEQLEPSRGAVVDIKHDVDR 435
           PKG +V      Q   S GA++  + D+D+
Sbjct: 384 PKGGDVAPDDLNQTNFSNGAIIRYREDIDK 413


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 287 LMQVLQERLNMSKPGKLESALKEMKWWGPQQNN 385
           ++Q   ER NMS P +  S  ++  W G   NN
Sbjct: 549 MIQRSLERKNMSTPSQCSSCFEQYCWNGTTVNN 581


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 598 ELGFLXRREVLSXRNHYXRHSLRRICRLYR 509
           E  FL     +S  NH+ +  L R C+ YR
Sbjct: 84  ETDFLVDAVFVSESNHHEKEILHRTCKRYR 113


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = -3

Query: 431 STSCLMSTTAPRLGSSCSVVGPTTSSPLGHSPAFLVSTC*VVPAAPASISWRREFASSCK 252
           S+S   S T     S  + V P +SS +  S     ++  V+P + + ++   E ASS  
Sbjct: 86  SSSVAASVTPVASSSVAASVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEVASSTT 145

Query: 251 VSMYSSESNCARRS 210
            S  +S ++    S
Sbjct: 146 SSAAASATSTGSSS 159


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 390 FQLFCCGPHHFISFR 346
           F L CC P  F+ FR
Sbjct: 506 FTLLCCSPERFLQFR 520


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 346 PKGDEVVGPTTEQLEPSRGAVVDIKHDVDRILAQHSYAHPYTHAA 480
           P  ++   P  +Q EP RG   DIK  ++      S  HP  H++
Sbjct: 515 PSNNQSNPPLRDQ-EPQRGDKGDIKSAINNSTEDLSKKHPALHSS 558


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 29  ESLKALNERLISENTALREAAAAQSVPGGQGPAESTPQQKE 151
           E + A NE+L +  +    AAAA +  GG  PA     ++E
Sbjct: 53  ELIAAGNEKLATVPSGGAAAAAAPAAAGGAAPAAEEAAKEE 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,142,675
Number of Sequences: 5004
Number of extensions: 41319
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)