Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24g06
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 445 QHSYAHPYTHAADLLEIKEENNDKGDIFYA 534
           +HSY H  T    LL I ++    GDI Y+
Sbjct: 128 KHSYVHTITVPNKLLRISQD----GDILYS 153


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 323 STC*VVPAAPASISWRREFASSCKVSMYSSESNCA 219
           S+C    AA A++  +R   S C +   SS S+ A
Sbjct: 154 SSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTA 188


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = -2

Query: 546 FVTACVEYVAFIVVLLFDFEKVCCVC 469
           +V+    YV+ + ++ F  E+   +C
Sbjct: 119 YVSEMSSYVSVLTIVAFSMERYLAIC 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,551
Number of Sequences: 438
Number of extensions: 3218
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)