Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24g04
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0208 + 1780275-1781123                                           32   0.32 
03_03_0280 - 16166962-16167393,16167646-16167770,16168305-161686...    29   3.0  
08_01_0076 - 540886-541527,542173-542754                               24   3.7  
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527...    29   4.0  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   5.3  
12_02_1251 - 27340437-27341332,27342668-27342980,27343050-27343232     27   9.2  
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    27   9.2  

>01_01_0208 + 1780275-1781123
          Length = 282

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = -1

Query: 414 LALILKPKVSAVR*RYREFIRPMVHHPFCWFWVRMSPALLMSPLLCPFIVIFSHSSWFTP 235
           L L L+P    ++   R F++  +H P C+F V   P    SP  CP I   S +   T 
Sbjct: 200 LFLTLRPPPFILQGPIRNFVK--IHVPSCYFPVHGCPRSPSSPTGCPTIGELSRADQSTV 257

Query: 234 QKKCNREIARKPQNALTT 181
                +EI     +++ T
Sbjct: 258 TSTIRQEIPEASNSSIIT 275


>03_03_0280 -
           16166962-16167393,16167646-16167770,16168305-16168645,
           16171153-16171313
          Length = 352

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 338 WWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIY 490
           WW     + R RYL+A  FG ++      +    I  LEP  G  +   +Y
Sbjct: 77  WWLSRSPHRRGRYLSANHFGAEVPNLSAKIVGANIGYLEPDRGRPSQFSLY 127


>08_01_0076 - 540886-541527,542173-542754
          Length = 407

 Score = 24.2 bits (50), Expect(2) = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 461 SGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSK 577
           S +AN S  Y  SH + +   ++FG   CE  +  P  K
Sbjct: 65  SASANVSRYYYNSHTELFFPSNTFG--ACERADCAPTFK 101



 Score = 23.0 bits (47), Expect(2) = 3.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 275 GHSNGDINSAGDILTQNQQKGWWTIGLI 358
           G ++GD     D      +K WWT GL+
Sbjct: 21  GGASGD--EEADYCPPTPRKEWWTTGLL 46


>07_01_0698 -
           5269329-5269579,5270673-5270928,5271158-5271725,
           5271757-5272763
          Length = 693

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 221 LHFFCGVNQLECEKITMNGHSNGDIN 298
           LHF CGVN+L    +   G   GD N
Sbjct: 532 LHFICGVNELVSGPVRSLGEKVGDYN 557


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 284 CCVRSL*SFHTRAGLHRRRNAIARSRENHKMH*LQ 180
           CC RS   F  RAG HRRR  + R R +   H L+
Sbjct: 142 CCDRSAPPFPPRAG-HRRRPRLHRHRHDLPFHALR 175


>12_02_1251 - 27340437-27341332,27342668-27342980,27343050-27343232
          Length = 463

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 327 WFWVRMSPALLMSPLLCPFIVIFSHSSWF 241
           W W++   A  +   L P++++  HS W+
Sbjct: 293 WTWLQEELATRVDRKLTPWLIVLMHSPWY 321


>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 452 EPASGNANDSMIYLRSHLDK 511
           EPA G  ND++++LR H D+
Sbjct: 449 EPAVGFVNDNLVFLRVHSDQ 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,227
Number of Sequences: 37544
Number of extensions: 288350
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)