Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24g04
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    25   0.46 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.60 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 564 SFSSDSQVTLP-KLSTARYLSKCDLK*IMLSLAFPEAGSRVQICF 433
           +F+ +  V L  K  T RYLS C+   + LSL+  E  ++V+I F
Sbjct: 14  AFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTE--TQVKIWF 56


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +2

Query: 425 LKKKQIWTLEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSK 577
           +K ++I  LE      +  +  LRSHLDK+L   S            PGSK
Sbjct: 13  VKDEKIVELEALLCRRDAEIQELRSHLDKFLQCASLKLAFEPRRNPGPGSK 63


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 377 LTAETFGFKINANGTSLKKKQIW-----TLEPASGNANDSMIYLRS 499
           LT    G  +  NG  +  +  W     T++PA  NA  +  YL+S
Sbjct: 373 LTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAGPAKYYLKS 418


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 281 SNGDINSAGDILTQNQQKGWWTIGLINSRY 370
           SNG  +S  D+L +  ++   TI   NS Y
Sbjct: 147 SNGSNSSNSDVLFKQNKEEEQTINRKNSDY 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,325
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)