Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f24
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    52   7e-08
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   6.6  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    25   8.8  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.8  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   8.8  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +3

Query: 201 LVEERIKTF--KNWPFNDKNK--CNVRNMAEAGFYSVATGVEDADAAKCFLCGKELDGWE 368
           L + R +TF  K WP+ ++    C    MA +GF    T  +  DAA C  C   L  WE
Sbjct: 116 LTKCREQTFVDKVWPYTNRPDYHCEPSVMAASGFVYNPTA-DAKDAAHCLYCDINLHDWE 174

Query: 369 STDDPWIEHKSHAAQCAF 422
             DDP+ EHK   A C F
Sbjct: 175 PDDDPYTEHKRRRADCVF 192



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +3

Query: 210 ERIKTF--KNWPFNDKNKCNVRNMAEAGFY----SVATGVEDADAAKCFLCGKELDGWES 371
           +R+ TF  K WP   + K     +A  GFY    S +   E  D   C++C K    WE 
Sbjct: 24  KRLDTFQKKKWP---RAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWED 80

Query: 372 TDDPWIEHKSHAAQCAFVQL 431
            DDP  EH +H+  C +  +
Sbjct: 81  DDDPLKEHITHSPSCPWAYI 100


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 174 MENESSLLFLVEERIKTFKNWPFNDKNKCNVRNMAEAG 287
           ++ E SL  L +ER   + N  FN +N  +  NM ++G
Sbjct: 26  IDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMDDSG 63


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 306  GVEDADAAKCFLCGKELDGWESTDDPW 386
            GV  A   +C  C K   G E T D W
Sbjct: 1159 GVGSASEVRCRSCAKPALGLEDTSDIW 1185


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 423 VQLGKKEDDLLLSENLSVIKQYM 491
           VQ  + E DLL +E LSVIK Y+
Sbjct: 184 VQHSEIESDLLNAEVLSVIKNYI 206


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +1

Query: 502 QNRLVKLPKKKLTKRL------NQSKENA*QGNKTNYYRLTR 609
           Q  LVK    +L +RL      NQS++N    N T Y+R T+
Sbjct: 99  QKDLVKETHARLEQRLEEIRKRNQSRKNQMSNNSTTYHRETK 140


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 450 SHLLSFRVVQMRTERRGSCVRSMDHQW 370
           S L  FR V   T  R + + S+D QW
Sbjct: 133 STLFRFRFVNEETRERQAFIDSLDFQW 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,759
Number of Sequences: 5004
Number of extensions: 41357
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)