Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f24
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 354 LDGWESTDDPW-IEHKSHAAQCAFVQLGKKEDDLLLSENLSVIKQYMINETKQI 512
           LD   + +  W I H SH+      + G      LLS N+ + + Y +N T  +
Sbjct: 198 LDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLRRHYSMNSTTYV 251


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 123 LNNYYFMVSSTD*RIKVNNQSNLPVI 46
           LN++YFM++       ++N  N P I
Sbjct: 228 LNHFYFMLNHNYPPFMLSNSLNFPQI 253


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
 Frame = +3

Query: 213 RIKTFKNWPFNDKNKCN-------VRNMAEAGFYSVATGVED 317
           ++  + NW  ND NK +       VR  A    + V TGV+D
Sbjct: 91  KLNPYPNWEMNDINKIDSIINIIRVRVDACDRLWGVDTGVDD 132


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 123 LNNYYFMVSSTD*RIKVNNQSNLPVI 46
           LN++YFM++       ++N  N P I
Sbjct: 228 LNHFYFMLNHNYPPFMLSNSLNFPQI 253


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
 Frame = -1

Query: 307 PVATL*KPASAIFRTLHLFL----SLKGQFLKV--LILSST-------RNSKELSFSILC 167
           P A L  P S+I+  L  F+     L  QF  V   I ++        R  KEL  +I+C
Sbjct: 364 PSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIVC 423

Query: 166 YV*Y 155
           +V Y
Sbjct: 424 FVSY 427


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
 Frame = -1

Query: 307 PVATL*KPASAIFRTLHLFL----SLKGQFLKV--LILSST-------RNSKELSFSILC 167
           P A L  P S+I+  L  F+     L  QF  V   I ++        R  KEL  +I+C
Sbjct: 417 PSAVLELPGSSIWSCLFFFMLILIGLDSQFCTVEGFITAAVDEWPRLLRKRKELFIAIVC 476

Query: 166 YV*Y 155
           +V Y
Sbjct: 477 FVSY 480


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,866
Number of Sequences: 438
Number of extensions: 2740
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)