Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f19
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    27   1.7  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   3.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.8  

>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 85  YRPVGCRDCLRTIKTGFGCN 144
           +RPV  ++CL+T+K+ +G N
Sbjct: 273 FRPVLFKNCLKTVKSKYGAN 292


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
 Frame = +3

Query: 36  KERVHHIVSEELNMKKLSARWVPRLLTHDQNRIRVQYSKE---CLDRFRVINP-----IF 191
           +ERV  +V E  N+ K +AR+   +L  D +   VQ+S E    ++  ++         F
Sbjct: 152 RERVSRLVRE--NLMKRAARF--NILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATF 207

Query: 192 YVDL*QQMKHGFIITRQNQ 248
           YVD  +  K GFI+  Q +
Sbjct: 208 YVDRARMEKQGFIVRAQGE 226


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 317 PTLQPWPFLEPTISNAS 267
           PT+ P PFL+PT S  S
Sbjct: 376 PTVSPNPFLQPTFSGTS 392


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 487 WKMFFFRHTWLFLLNTLMKII 425
           WK+ FF H  L  L T+ K+I
Sbjct: 239 WKLLFFNHWKLVALITITKLI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,494
Number of Sequences: 5004
Number of extensions: 59846
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)