Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f19
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0882 - 23978169-23979251                                         30   1.7  
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583...    28   7.0  
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754...    27   9.2  

>12_02_0882 - 23978169-23979251
          Length = 360

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 428 NLHQCIQ*KQPGMAKKKHLPP*GHTCVKAMAKINELK*DLLPHLPYSPDLAPS 586
           +L   ++ KQ  M    ++   GH  V  M K NEL  DLLPH   S    P+
Sbjct: 204 DLRDLVEMKQQNMKADTNIHDQGHPSVMQMQK-NELSLDLLPHKNSSDHEVPT 255


>02_01_0783 +
           5835517-5835861,5835989-5836060,5836140-5836220,
           5836293-5836490,5836576-5836647,5836803-5836889,
           5836986-5837084,5837191-5837274,5837351-5837437,
           5837578-5837649,5837912-5838025,5838127-5838214,
           5838293-5838388,5838507-5838694
          Length = 560

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 362 RSHLHPKRWNP*LIQPTLQPWPFLEPTISNASTVLIEFLILAC-NNEPMFHLLSQI 198
           R  LH K W     +P   P  FL+P    A+TVL  +L   C ++   +H +  I
Sbjct: 250 RESLHDKEWVAKFEKPKGDPSAFLKP----ATTVLSPYLKFGCLSSRYFYHCIQDI 301


>10_07_0195 +
           13972656-13972970,13973518-13973848,13975312-13975463,
           13975573-13976280,13976424-13976615,13977264-13977425
          Length = 619

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 77  EKVIGPLGAAIAYARSKQDSGAILK 151
           E VIGP GA I Y R    S  ++K
Sbjct: 515 EAVIGPTGARIDYIRQASGSSVVIK 539


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,836
Number of Sequences: 37544
Number of extensions: 360525
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)