Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f18
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   0.52 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   1.2  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   1.2  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    24   6.4  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    24   6.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    24   6.4  

>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 80  IASHLNLHKMSNMKEQEQNTAKLVMNAFYSVDGKNGVTAADIT 208
           + SH N+   S+   +EQ  AKL  +AF S     G + A+ T
Sbjct: 502 LTSHTNITTSSHHNPREQEIAKLADDAFASFRQTAGTSTANST 544


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -1

Query: 170 RCRMRS*PVSPCSVLAPSCXTF 105
           R + RS PVSPCS  APS  TF
Sbjct: 384 RYQRRSRPVSPCST-APSSPTF 404


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 11  TVSLIGFHVFFFVIQHLINI*NVIASHLNLHKMSN 115
           T SLI F++   +IQHL  I  +I++   L   SN
Sbjct: 47  TFSLIVFYILIMIIQHLKEIHYLISASAKLLLASN 81


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 122 EQEQNTAKLVMNAFYSVDGKNGVTAADITKYLQEKFGD 235
           E ++NT  +  + F     + GV  +DI   +   FGD
Sbjct: 448 EYQKNTILIQTSTFTEEQKEYGVAISDIVTRINSAFGD 485


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 282 FKVSSAFPTKALTFHTSPNFSCKYFVISAAVTPFLPS 172
           F   S FPT      T+PNF   +F  SA    F+ S
Sbjct: 113 FNTQSTFPTIRNWICTNPNFKLSFF--SAMYVGFVSS 147


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 187 RDGGGYNEIFTGKIWRRMESKRFSWK 264
           ++ GGYN+  +    ++  SKRF WK
Sbjct: 650 KESGGYNKRNSKIDLKKSFSKRFHWK 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,490,263
Number of Sequences: 5004
Number of extensions: 27276
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)