Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f18
         (365 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279...    28   2.6  
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    27   4.5  
02_05_1119 - 34248772-34249989                                         27   4.5  
03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564...    27   6.0  

>01_06_0791 -
           32026086-32026944,32027044-32027600,32027686-32027903,
           32028171-32028261
          Length = 574

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 119 KEQEQNTAKLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALV 259
           KE+     ++  NA+Y   G   + A  +  Y+Q+  G  WKV   V
Sbjct: 173 KERRSRILQVYFNAYYGSIGVAFMVAVTVVVYVQDNLG--WKVGLAV 217


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 143 KLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALVGKAE-ETLKXSAQLGFL 307
           ++++ A   ++ K+G   + I+K+++ K+GD+    A +  A    +K S +L FL
Sbjct: 18  EMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFL 73


>02_05_1119 - 34248772-34249989
          Length = 405

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 193 GGGYNEIFTGKIWRRMESKRFSWKSRGNFEXECTAWL 303
           GGG      G+ WRR E++R   ++ G    E  AW+
Sbjct: 79  GGGVVGCLRGR-WRRCEARRGIARAAGGVAGEIQAWI 114


>03_06_0707 -
           35655084-35655215,35656088-35656229,35656358-35656485,
           35656852-35656944,35657183-35657252,35657324-35657445,
           35658143-35658265,35659453-35659710,35659995-35660074,
           35660244-35660389,35660773-35660906,35661001-35661137,
           35663013-35663135,35663521-35663590,35663925-35664050,
           35664166-35664393
          Length = 703

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 232 RRMESKRFSWKSRGNFEXECTAWLLGQTR 318
           + +ES  FSW S   F+ +   WL+G+ +
Sbjct: 368 KSIESSAFSWISSLPFDGKIKEWLIGEEK 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,354,109
Number of Sequences: 37544
Number of extensions: 175358
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)