Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f18
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical ...    29   0.77 
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z80217-1|CAB02295.1|  209|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AF016683-1|AAB66199.3| 1360|Caenorhabditis elegans Hypothetical
            protein K09F6.3 protein.
          Length = 1360

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 357  PHIPRAILEIYRSPRLSKK--PSCALXFKVSSAFPTKALTFHTSP-NFS-CKYFV 205
            P +PR IL I+R  R SK     C+     S+AF +  L +H  P NF  C + V
Sbjct: 1144 PELPREILNIFRVARNSKSLVVHCSNGIGRSAAFVSWELCYHFVPVNFEICDFSV 1198


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 184 WRDGGGYNEIFTGK-IWRRMESKRF 255
           + DGGGYN    G  IW RM +++F
Sbjct: 376 FEDGGGYNVHMNGSLIWSRMTNRQF 400


>Z80217-1|CAB02295.1|  209|Caenorhabditis elegans Hypothetical
           protein F37B1.1 protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 161 FYSVDGKNGVTAADITKYLQEKFGDVWKVS 250
           F SVDG     +A I +YL +KFG   K S
Sbjct: 55  FLSVDGFEIPQSAAILRYLAKKFGYAGKTS 84


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 273 SSAFPTKALTFHTSPNFSCKYFVISAAVTPFLPSTL*NAFMTSFAVFCSCSF 118
           S +F T  +  +  P  S  Y   + ++   LP  L +  + SF  FC+C F
Sbjct: 75  SGSFSTLGVLLNIKPVLSISYLFGNFSIF-LLPVILISFLLMSFNRFCACFF 125


>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 263 KAEETLKXSAQLGFLDKRGERYISKIAR 346
           K  ++ + S  L FL+K G++YI K  +
Sbjct: 404 KTRKSFEFSENLKFLEKIGQKYIEKFGK 431


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 263 KAEETLKXSAQLGFLDKRGERYISKIAR 346
           K  ++ + S  L FL+K G++YI K  +
Sbjct: 404 KTRKSFEFSENLKFLEKIGQKYIEKFGK 431


>AF078787-2|AAC26950.1|  407|Caenorhabditis elegans Hypothetical
           protein T17A3.3 protein.
          Length = 407

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 263 FQLKRLLSIRLQIFPVNISLYPPPSRHSYRQRCRMR 156
           FQ  R+ S R+Q   + I+L   P  +SYR+  R+R
Sbjct: 332 FQYLRMFS-RVQPLHLEIALAQTPLSYSYRRSARLR 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,227,874
Number of Sequences: 27780
Number of extensions: 155640
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)