Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24f17
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.63
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 28 1.1
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 27 1.9
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 1.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 3.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 4.4
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 26 4.4
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.4
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 7.7
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 0.63
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 35 SENVLKIIKCNTRASSCYFAYGFQFTVHTEMANESDV 145
S+N +KII C + C+F G T + ++ + S +
Sbjct: 293 SQNSIKIISCLYQVGFCFFKIGSSITANLKLPDNSRI 329
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +2
Query: 239 TITDMLKIKEAFQANMNKMLPNEFRNLLRTLLNVEYDDDDYKILFMKINTNRTGDIEWDD 418
T ++++ I + + + +KM +FR+ L T D D + L++ +N + +
Sbjct: 364 TRSEIVDIFKEYTSGSDKMSLEQFRHFLSTSQKARLDSDSIRTLYVSFCSNDDSKMGLIE 423
Query: 419 LVSHLL 436
S LL
Sbjct: 424 FTSFLL 429
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/98 (20%), Positives = 42/98 (42%)
Frame = +2
Query: 131 NESDVKSIMTFSTKSEASTALQNISRWKNAPLHERCTITDMLKIKEAFQANMNKMLPNEF 310
N M+F ++ S ++ K+ HE + + L + + + +
Sbjct: 190 NAPHASKTMSFILANQLSEIVEEYCS-KHPGYHEAASKSTCLIVDRSLDTAAPFLHEFTY 248
Query: 311 RNLLRTLLNVEYDDDDYKILFMKINTNRTGDIEWDDLV 424
+ ++ LL ++ + Y+IL + RTG ++ DDLV
Sbjct: 249 QAMIHDLLPIKNEQYPYEILGPQGTEKRTGKLDDDDLV 286
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.1 bits (57), Expect = 1.9
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 3/180 (1%)
Frame = +2
Query: 17 LLHTFFSENVLKIIKCNTRASSCYFAYGFQFTVHTEMANESDVKSIMTFSTKSEASTALQ 196
+L T+ ++NV + KCN + S ++ FQ AN+ +K ALQ
Sbjct: 1710 ILLTYLNQNVSSLEKCN-QIFSIFYEVFFQHPSTNVYANDEGIK-----------IGALQ 1757
Query: 197 NISRW-KNAPLHERCTITDMLKIKEAFQANMNKMLPN-EFRNLLRTLLNVEYDDDDYKIL 370
IS + KN P T+MLK+ F + + M+ + +L ++ + ++
Sbjct: 1758 IISFFLKNVPEITVQHQTEMLKMCSLFGNSEDVMIKQLSIYVMSLFILRSQFPYELVNVV 1817
Query: 371 FMKINTNRTGDIEWDDLVSHLLLGYFASGAEEQRESLQPPI-MGLPTVMRSQHRHPVSRI 547
+M + ++ IE LV F+ E+ ES + PI LP + S +S++
Sbjct: 1818 YMAL--LKSSPIEVRHLVKSSFDNIFSYIFSEEPESKKSPIWFELPLQVISSQSQNISQL 1875
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 290 KMLPNEFRNLLRTLLNVEYDDDDYKILFMKINTNRTGDIEWDD 418
K+L NE L + LN YD D +L + + + +DD
Sbjct: 650 KLLLNEMGKLFQVELNFSYDSPDVNLLIEQFYEITSYESNYDD 692
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 425 SHLLLGYFASGAEEQRESLQPPIMGLPTVMRSQHRHPVS 541
S ++G F + S+ PI+ PT + QHR+ S
Sbjct: 32 SSKIVGSFTNSQNSSVGSVHSPILESPTSLNRQHRNSFS 70
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 8 FETLLHTFFSENVLKIIKCNTRASSCYFAYGFQFTVHTEMANESDVKSIMTFSTKSEAST 187
FET N + ++R+SS + A +FT H + S S +FS S
Sbjct: 101 FETAPSIASFSNSAADVSSHSRSSSSWSAKLSRFTKHASKPSLSSNSSDSSFSKSGSESN 160
Query: 188 ALQNISRWKNAP 223
AL + ++ P
Sbjct: 161 ALSSRGSFELEP 172
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 176 EASTALQNISRWKNAPLHERCTITDMLKIKEAF 274
+ T +QN + A +HE+CT K+KE F
Sbjct: 714 DCPTNIQNSAIKNAASVHEQCTKAIYQKVKELF 746
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 200 ISRWKNAPLHERCTITDMLKIKEAFQANMNKMLPNEFRNLLRTLLNVE 343
IS W L I +L ++ F A M P+E R +L N E
Sbjct: 327 ISEWMGYALTFESMIDSVLVARDRFLAPSGIMAPSETRLVLTATTNTE 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,154
Number of Sequences: 5004
Number of extensions: 45677
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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