Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24f17
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 33 0.21
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 30 1.1
03_05_0197 + 21884415-21885332,21886130-21886750 30 1.5
07_01_0637 + 4767021-4767083,4767175-4767249,4767339-4767500,476... 29 2.6
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 29 2.6
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171... 29 2.6
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054... 28 4.5
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 27 7.9
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 32.7 bits (71), Expect = 0.21
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 409 MGRFSLPSTAGVLREWCRGAARIPTAAYH-GSTHRHALAT--PTPCFEDM 549
+GR ++ G L +W GAARI AY S H L++ PT F+D+
Sbjct: 85 IGRMTVEEKVGALGDWTDGAARIGLPAYRWWSEALHGLSSTGPTTKFDDL 134
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 449 ASGAEEQRESLQPPIMGLPTVMRSQHRHPVSRI 547
+S ++ SL PP+ P +R+QH+H V R+
Sbjct: 681 SSTLKDNMASLMPPLTSSPPDVRAQHQHSVLRV 713
>03_05_0197 + 21884415-21885332,21886130-21886750
Length = 512
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +2
Query: 341 EYDDDDYKILFMKINTNRTGDIEWD---DLVSHLLLGYFASGAEEQRESLQPPIMGLPTV 511
E+ D + +L + + R GD++ DL+++++L FA+G+E +L+ L +
Sbjct: 271 EHGDGEEDLLGVLLRLQRNGDVQCPLTTDLITNVVLDMFAAGSETSSTTLE---WALTEL 327
Query: 512 MRSQH 526
+R+ H
Sbjct: 328 VRNPH 332
>07_01_0637 +
4767021-4767083,4767175-4767249,4767339-4767500,
4767624-4767702,4767922-4768076,4768225-4768288,
4768928-4769007,4769366-4769431,4769932-4769982,
4770087-4770238,4770270-4770287,4770323-4770413,
4771156-4771236,4771330-4771407,4772315-4772350,
4772425-4772468,4772567-4772645,4773035-4773125,
4773268-4773374
Length = 523
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 209 WKNAPLHERCTITDMLKIKEAFQANMNKMLPN 304
W+N P+ R I MLK +E +ANM+K+ N
Sbjct: 77 WRNTPVTTRQRI--MLKYQELIRANMDKLAEN 106
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 401 DIEWDDLVSHLLLGYFASGAEEQRESLQPPIMGLPTVMRSQHRHPVSRI 547
D+ D++ ++ L +SGA R L G+ MR+QH HPV ++
Sbjct: 290 DVWSDNVWNNFLRVPLSSGASGSRVLLTTRNEGVARGMRAQHLHPVEKL 338
>02_01_0258 -
1709672-1709752,1710277-1710460,1710627-1710841,
1711321-1711390,1711525-1711607,1711720-1711884,
1712068-1712172,1713021-1713140,1713620-1713718,
1713790-1713885,1714367-1714480,1715265-1715372,
1716200-1716264,1716430-1716609,1716747-1717397,
1717497-1717565,1717639-1717858
Length = 874
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 260 IKEAFQANMNKMLPNEFRNLLRTLLNVEYDDDDYKILFMKINTNRTGDIEWDDLVSHLLL 439
I + + + K+ FRN++ + ++ + Y+IL + +GDI L + ++L
Sbjct: 473 IYDLMRRHKMKLKTETFRNMINLCVKMKDFEGAYRIL---TDAEESGDISTVSLYNAIML 529
Query: 440 GYF 448
GYF
Sbjct: 530 GYF 532
>05_07_0073 -
27504169-27504882,27504989-27505161,27505302-27505485,
27505604-27505675,27506173-27506733,27506846-27507145
Length = 667
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Frame = +1
Query: 403 YRMGRFSLPSTAGVLREWCRGAARIPTAA------YHGSTHRHALATPTPCFEDMFL 555
+R S A + + A +IP+ A YHG H+ A AT + CF+ F+
Sbjct: 91 FRSDVLSFAQMAEQVNQTMSVAGKIPSGAFNAMFDYHGCWHKDAAATGSLCFDGRFI 147
>03_06_0071 +
31465707-31466237,31467455-31468075,31468438-31468520,
31468895-31468979
Length = 439
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 194 QNISRWKNAPLHERCTITDMLKIKE 268
+NIS+WK P+ +R + + K++E
Sbjct: 349 ENISKWKTVPMVQRVALDVVAKVEE 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,155
Number of Sequences: 37544
Number of extensions: 272163
Number of successful extensions: 745
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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