Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f16
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 385 TTVEELKIKGNECVKDGKFIEAVLHYTQAIKMDPN 489
           T+V+ L+++G+E    G  +    HY     M P+
Sbjct: 748 TSVKSLRLEGDETPPYGMELTEAEHYALYTAMAPH 782


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 511 CCCAKYSCLDPF 476
           C C   +CLDP+
Sbjct: 315 CTCKAVACLDPY 326


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +1

Query: 340 FCLLKNTIMDEAKKPTTVEELKIKGNE------CVKDGKFIEAVLHYTQAIKM 480
           +CL  NT+   ++  TT E  KI  +E      C+ + +  + +L Y   + M
Sbjct: 531 YCLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGPVTM 583


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = +1

Query: 340 FCLLKNTIMDEAKKPTTVEELKIKGNE------CVKDGKFIEAVLHYTQAIKM 480
           +CL  NT+   ++  TT E  KI  +E      C+ + +  + +L Y   + M
Sbjct: 531 YCLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGPVTM 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,149
Number of Sequences: 438
Number of extensions: 3601
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)