Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24f14
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 30 0.35
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 28 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.3
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 26 4.3
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 4.3
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 26 5.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 7.5
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 7.5
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 25 9.9
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 9.9
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|... 25 9.9
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 29.9 bits (64), Expect = 0.35
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Frame = +3
Query: 210 HGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAP----VAEGPPMNQ 377
HG P + S P+ +P N + QYY S IN VA V+ P
Sbjct: 61 HGA-PGHQTSASQPSTVMPALETNASNAQYYPAYSVINGNNSVQVASPAYTVSHSPHSFS 119
Query: 378 DPTKKAQPG-GIKPDTVCFHCAPTP 449
+P A P P+ VC +C P P
Sbjct: 120 NPRYVAVPQKSTSPNQVCSYCEPLP 144
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 222 PPLMSPRSVPTPEIPRGPDNQ 284
P ++P+ P+PE+P+ PDN+
Sbjct: 236 PSNVTPKKKPSPEVPKLPDNR 256
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 321 NSVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPP 458
N P ++ VA+ PP + P A + P F P+P PP
Sbjct: 1491 NVPVPSMIPSVAQQPPSSVAPAT-APSSTLPPSQSSFAHVPSPAPP 1535
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +2
Query: 338 NSGTCSGRSA----HEPRSNKESTARWDQARYGVFPLRSDPWSALVV 466
++ +CS S HE S RWD A PL W+ LVV
Sbjct: 39 SNDSCSSESGDLKIHEVNSEGHIIVRWDDANDPENPLNWPLWAKLVV 85
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/89 (21%), Positives = 40/89 (44%)
Frame = +3
Query: 108 FTV*DMSKPKWDFRDISKGLKIFRDILLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQY 287
F + D + +W + +GL I D++ + P S +P P+ G +++
Sbjct: 78 FPLLDNAVYEWLQQREVEGLPISGDMIKQAATRFWSKIPAYAS---LPLPDFSNGWLDKF 134
Query: 288 SKQYYYKRSAINSVFPPIVAPVAEGPPMN 374
+++Y ++SA+N I V P++
Sbjct: 135 RRRHYIQQSAVNQALESIKFEVFREYPVH 163
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 182 ITKNFKPFRDVSEIPLWLRHILHCKSINLQAKLLLVYMPDL 60
IT + + +R V+ LW RH + L+A +L+ P++
Sbjct: 702 ITNDVRLWRIVARYYLWRRHFAESLNATLKAYRILISSPNV 742
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 145 KSHFGLDISYTVNQSIYRQN 86
K +FG DIS T +YRQ+
Sbjct: 481 KDNFGSDISATTKHELYRQS 500
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 303 YKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 398
+ S + F PI+AP G P ++ K+A+
Sbjct: 99 FTNSELPGAFRPIIAPRVFGAPYDEQAAKEAE 130
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 383 WILVHGRTFRYRCHYWWKHRIYCASFI 303
W GR F RC W +H YC ++I
Sbjct: 254 WRGPFGR-FSIRCILWDEHDFYCRNYI 279
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 169 KFFVISC*VENTIFTDDFLLLCPRGLYLRQKYL 267
K+ + V N ++T+D P+G Y K+L
Sbjct: 336 KWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHL 368
>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 176 KNFKPFRDVSEIPLWLRHILHCKS 105
+NFK D +PLW+ ++L+ KS
Sbjct: 94 QNFKLCYDDETLPLWMVYVLNDKS 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,978
Number of Sequences: 5004
Number of extensions: 60881
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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