Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24f14
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 36 0.039
10_08_1037 - 22477358-22478752 33 0.21
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 31 0.84
10_02_0194 + 6552638-6552895,6553088-6553246,6553551-6553702,655... 30 1.5
12_02_1174 - 26696869-26698191 30 1.9
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 30 1.9
06_03_0905 + 25843547-25844314 30 1.9
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.6
06_03_1310 + 29238644-29240260 29 2.6
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 2.6
07_03_1603 + 28080561-28080706,28080752-28080834,28082055-280820... 29 3.4
06_01_0275 + 2029542-2029689,2029777-2030295,2030657-2030754,203... 29 3.4
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 3.4
01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718 29 3.4
11_01_0385 + 2915532-2916482 29 4.5
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660... 28 5.9
07_03_1160 - 24430240-24431268 28 5.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 5.9
05_04_0192 + 18936955-18937168,18937385-18937498,18937588-189376... 28 7.8
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 35.5 bits (78), Expect = 0.039
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 222 PPLMSPRSVPTPEIPR-GPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 398
PP +P ++ P+ P N +S ++ K ++ PP+ +P E PP P+K
Sbjct: 162 PPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLPPAEPPVPSPSPEHPP-RHSPSKPPA 220
Query: 399 PGGIKPDTVCFHCAPTPGPP 458
KP T P P
Sbjct: 221 YAPAKPPTALRPAIPPAAMP 240
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Frame = +3
Query: 222 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRS----AINSVFPPIVAPVAEGPPMNQDPTK 389
PP P P+PE P P + SK Y + A+ PP P Q P +
Sbjct: 196 PPAEPPVPSPSPEHP--PRHSPSKPPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQR 253
Query: 390 KAQPGGIKPDTVCFHCAPTPGPP 458
P P + APT PP
Sbjct: 254 PPAPATKPPPSFPPQLAPTMPPP 276
>10_08_1037 - 22477358-22478752
Length = 464
Score = 33.1 bits (72), Expect = 0.21
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Frame = +3
Query: 222 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPM--NQDPTKKA 395
PP P+ P P P +Q K + I PPI PVA PP+ +Q P
Sbjct: 242 PP--QPQHQHHPHRPLPPQHQQPKPPSMRLQKIRP--PPISTPVARPPPVHNHQIPNPNH 297
Query: 396 QPGGIKPDTVCFHCAPTPGPP-WS 464
P +P P PGPP W+
Sbjct: 298 NPAFHRPPPPQPMPMPMPGPPVWA 321
>01_06_1783 + 39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 360 GPPMNQDPTKKAQ--PGGIKPDTVCFH-CAPTPGPPWS 464
GP + DP KK Q P G P C H C P P W+
Sbjct: 993 GPYRSTDPNKKTQRGPDGRPPPQDCLHWCMPGPVDTWN 1030
>10_02_0194 +
6552638-6552895,6553088-6553246,6553551-6553702,
6553741-6553804
Length = 210
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 419 IWLDPTGLCFLCWILVHGRTFRYRCHYWWKHRIYC--ASFIIILLGILVIRATRYFW 255
I+L + L F CW LV + + + +W + C F +GI ++R + W
Sbjct: 70 IFLAGSSLTFACWYLVQSKVLKVYPYKYWSSMVTCLVGGFQTAFVGI-ILRRDKNAW 125
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 324 SVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPP 458
SV PP+V P + PP Q P+ P P P P PP
Sbjct: 169 SVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPP 213
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Frame = +3
Query: 222 PPLMSPRSVPTPEI--PRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKA 395
PP++ P+ P P + P P ++ SV PP+V P + PP P+
Sbjct: 172 PPVVQPKPQPPPSLQPPSPPPPPPTRP--------PSVKPPVVQPKPQPPPTLPPPSPPP 223
Query: 396 QPGGIKPDTVCFHCA---PTPGPP 458
P + P T A P P PP
Sbjct: 224 PPPTVPPRTPGDTPAVVEPKPQPP 247
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +3
Query: 222 PPLMS-PRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 398
PPL+S P+ E+PR P N + A ++ P AP+A P QD + Q
Sbjct: 521 PPLLSSPKIKELHELPRPPANASKHTTFPSLVAHSAPLVPNSAPLA---PRGQDHFRPRQ 577
Query: 399 PGGIKPDTVCFHCAPTPGPP 458
P T +P P PP
Sbjct: 578 TPPSAPQT----ASPLPTPP 593
>06_03_0905 + 25843547-25844314
Length = 255
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Frame = +3
Query: 216 RFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVA-PVAEGPPMNQDPTKK 392
R PPL++P VP P+GP + + PP+ PV GPP+
Sbjct: 75 RPPPLVAPPKVPVTHPPKGP--------VTRPPPVTYPTPPVTTPPVVVGPPVTYPTPPV 126
Query: 393 AQPGGIKPDTVCFHCAPT--PGPP 458
P + V + P P PP
Sbjct: 127 TTPPVVVGPPVTYPTPPVTYPTPP 150
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 225 PLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVF-PPIVAPVAEGPPMNQDPTKKAQP 401
P + R +P P +P P + S SV PP+ AP A PPM P
Sbjct: 499 PHLRVRHMPAPPVPTPPAP--APPVSTLPSPAPSVHTPPVTAPPATAPPMIAPPVATPPD 556
Query: 402 GGIKPDTV 425
P TV
Sbjct: 557 SASSPSTV 564
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Frame = +3
Query: 216 RFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKA 395
R PP P S PTP P YS+ K S S PP + PP +
Sbjct: 393 RTPPTPPPPSSPTPSHLPPPPPTYSES--PKSSMPPSTSPP--SSHGASPPSSSSSPPTE 448
Query: 396 QPGGIKP--------DTVCFHCAPTPGPPWS 464
PG + P T H AP PG P S
Sbjct: 449 HPGYVLPPLTPPPPTTTPPGHHAPVPGTPSS 479
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = +3
Query: 222 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQP 401
PP +P PTP+ P N Y + FP AP PP Q + +
Sbjct: 117 PPAPAPPPTPTPKFPSSSANPSPPDAYPFTN--YPFFPNFAAP---PPPTQQQQQQPSGD 171
Query: 402 GGIK--PDTVCFHCAPTPGPP 458
GG+ P + PT PP
Sbjct: 172 GGLPTFPANISTLVHPTQRPP 192
>07_03_1603 +
28080561-28080706,28080752-28080834,28082055-28082092,
28083639-28084051,28084390-28084458,28084868-28084871,
28086638-28086763
Length = 292
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 386 CWILVHGRTFRYRCHYWWKHRIYCASFIIILLGI 285
C+++ H + FR + W+HR+ II++L I
Sbjct: 137 CYMISHSKVFRQQDAANWQHRVIFPDEIIVMLRI 170
>06_01_0275 +
2029542-2029689,2029777-2030295,2030657-2030754,
2031718-2032028,2032560-2032631,2032729-2033398
Length = 605
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +3
Query: 309 RSAINSVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDTVCFHCAPTPGPPWSWD 470
RS ++S+ PP PP D + +P G + D H P P WD
Sbjct: 39 RSRVSSLLPPQAEESPSSPPPRID---QIEPSGWESDPATAHPQHLPFEPSGWD 89
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 1/80 (1%)
Frame = +3
Query: 222 PPLM-SPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 398
PPL SP P P PR + +S + P A P PT +
Sbjct: 71 PPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSP 130
Query: 399 PGGIKPDTVCFHCAPTPGPP 458
P H P P PP
Sbjct: 131 YSAPSPTPTPTHTQPRPSPP 150
>01_07_0078 - 40923115-40924016,40924341-40924416,40924686-40924718
Length = 336
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Frame = +3
Query: 222 PPLMSPRSVPTPEIPRGP------DNQYSKQYYYKRSAINSVFPPIVAP 350
PP +P S+P P GP D +YS YY + S + P +P
Sbjct: 241 PPAPAPMSMPMPMARPGPSSQGYIDEEYSPSYYNRSSPYEPYYYPQPSP 289
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Frame = +3
Query: 210 HGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAI-------NSVFPPIVAPVAEGPP 368
+ ++PPL PTPE P P N++ + + +PP+ + PP
Sbjct: 176 NNQWPPLPPFNQPPTPEWPH-PGNKWPPLPPFHPPPTPAWPHPGGNKWPPLPPFPSHPPP 234
Query: 369 MNQDPTKKAQPGGIKPDTVCFHCAPTPGPPWSWDGHQY 482
P QPG P F P P P W G+Q+
Sbjct: 235 TPAWP----QPGNKWPPLPPFPSHPPPTPAWPHPGNQW 268
>10_02_0197 +
6596197-6596402,6596766-6596828,6599679-6599795,
6600311-6600545,6600771-6600929,6601159-6601310,
6602511-6602571
Length = 330
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 419 IWLDPTGLCFLCWILVHGRTFRYRCHYWWKHRIYC--ASFIIILLGILVIR 273
I L + + CW LV + + + +W I C F + +GI++ R
Sbjct: 191 ILLVASSFAYACWYLVQSKVLKVYPYKYWSSMITCLVGGFQVAFVGIILRR 241
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Frame = +3
Query: 222 PPLMSPRSVPTPE-----IPRGPDNQYSKQYYYKRSAINSVFPPI----VAPVAEGPPMN 374
PPL +P P P+ IP GP + NS P + P GP +
Sbjct: 167 PPLPNPNVPPKPDQPPQPIPNGPPKPDMLPMPKPDGSPNSYAPSVPDQSTQPNPNGPSIP 226
Query: 375 QDPTKKAQPGGIKPD 419
P + G IKPD
Sbjct: 227 NQPPQPIPNGPIKPD 241
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 SVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDTVC-FHCAPTPGPPWSWDGHQYY 485
S +PP + + + PP T PGG P T C +P+ G + G YY
Sbjct: 326 SYYPPTPS-IGDVPPSPSSDTSPTTPGGGSPSTPCDTPPSPSSGTSPTTPGGGYY 379
>05_04_0192 +
18936955-18937168,18937385-18937498,18937588-18937656,
18937807-18937826,18937932-18937984,18938082-18938139,
18938338-18938367,18938468-18938719
Length = 269
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +3
Query: 366 PMNQDPTKKAQPGG---IKPDTV-CFHCAPTPGPPWSW 467
P+N + TK+ G + PD + C+H A TPG W
Sbjct: 170 PLNLNNTKETLNNGEIQLDPDKIYCYHFAATPGYQLKW 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,776,071
Number of Sequences: 37544
Number of extensions: 417532
Number of successful extensions: 1427
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -