Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24f08
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 31 0.43
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 31 0.57
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 29 3.1
03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409 29 3.1
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 27 7.1
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110... 27 7.1
12_02_1281 + 27523411-27523561,27523725-27523810,27524653-275247... 27 9.3
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 27 9.3
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 27 9.3
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 27 9.3
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 190 YKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRR 360
Y P WK R R K+NEG P S+D P W++LG V R
Sbjct: 593 YHRPSPWKVLGGVLHRTTRRGEKNNEGAPPLFSRDVHGNGHHRP-SPWKALGGVLHR 648
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 31.1 bits (67), Expect = 0.57
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +1
Query: 79 PEGSQPENDTLSKSN----DICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQL 246
P GS P+ND S+ D+ K P SL+ P +K + NF + +
Sbjct: 688 PVGSAPKNDNKSRHGIQAADVSGVTSAKDPTSTKTSLDRLKQPMPYKGRKELMNFLHDAM 747
Query: 247 RSTKSNEGDRPSGSKDNFEEKEITPDQK 330
+S N P + DQK
Sbjct: 748 QSPDKNTSTAPVSQRKRVAAPLGNVDQK 775
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/74 (25%), Positives = 30/74 (40%)
Frame = +1
Query: 214 KSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSP 393
+S S N+ +++ + P+G K N I+P SL V S A T K
Sbjct: 367 RSTSRTDVNKANPARASRNNIPTGGKSNRVSPSISPSSSVDSLSSVVSGASTASTVGKMS 426
Query: 394 KSPGENSSHSKRLA 435
+ S+ S L+
Sbjct: 427 HTSESFSTRSSSLS 440
>03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409
Length = 99
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 274 RPSGSKDNFEEKEITPDQKWQSLGK 348
+P+G+K F +E P+Q WQ+ G+
Sbjct: 35 KPAGNKKKFITREEEPEQYWQAAGE 59
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 27.5 bits (58), Expect = 7.1
Identities = 26/117 (22%), Positives = 47/117 (40%)
Frame = +1
Query: 79 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 258
P G P + + S+D + KP+K E + + K KK +N ++TK
Sbjct: 328 PSGPNPSIKSKASSSDQ-KPKPSKPTEEEREEKAAAAVAAEKPKKKKATNEIDKIFQATK 386
Query: 259 SNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKR 429
S+ R + EE K +S G ++ + A+ +K + ++ KR
Sbjct: 387 SSGKKRKQQQQQGEEESVRAKKPKERSEGA--KKSNKAKKGSKGRDTDDDDEVEEKR 441
>03_05_0788 +
27709563-27709832,27710101-27710887,27710947-27711086,
27712209-27712442,27712782-27712847
Length = 498
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 316 TPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQ 474
+P K + K+F++ + + +PK G+ + LA K+++ + GKS+
Sbjct: 389 SPSFKTRQNQKLFQKSEYLRLVHDAPKYEGKLCKKACLLAYKEILKNEIGKSK 441
>12_02_1281 +
27523411-27523561,27523725-27523810,27524653-27524718,
27524801-27524971,27525365-27525535,27525620-27525739,
27525868-27526014,27526193-27526264,27526359-27526832,
27526914-27527086,27527194-27527230
Length = 555
Score = 27.1 bits (57), Expect = 9.3
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 103 DTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPS 282
D+LSK+N K+P+ + T + K KS R+ R G +
Sbjct: 363 DSLSKTNGFLSKRPSFQMRSSVSTTTTTLVNHAKGASKSFDGGCRSLDRYKGHVNGSGMN 422
Query: 283 GSKDNFEEKE 312
S D+ E+KE
Sbjct: 423 VSTDSSEDKE 432
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 314 SLLTKSGNLWGKYFVVKALPKRGTSL 391
S L K G +WG Y V + KRG +
Sbjct: 301 SWLCKEGRMWGAYMVFAEMFKRGVEV 326
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.1 bits (57), Expect = 9.3
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Frame = +1
Query: 226 NFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPD------QKWQSLGKVFRRQSFAETWNK 387
N+F+ + N SG ++ EEK + Q +Q+ G F+ QS N
Sbjct: 357 NYFQGEASQNDGNSIKEQSGYGNSCEEKTFQSNRNYFQGQAFQNDGNSFKEQSVQNNGNS 416
Query: 388 SPKSPGENSSHSKRLAVKKVISSYF 462
+ EN+ +S + + + YF
Sbjct: 417 IEEQICENNGNSCEVQIFQNNKDYF 441
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 160 EGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKD 294
EG D L L++Y++ W+KS+ S + + G D
Sbjct: 169 EGYDKLRLSAYQSLSAWRKSVDGAVGGLTASVDATKKQAAGGVTD 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.126 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,862,865
Number of Sequences: 37544
Number of extensions: 249644
Number of successful extensions: 468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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