Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f07
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    30   0.23 
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    29   0.40 
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    28   0.69 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   1.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   1.6  
SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.9  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   4.9  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   6.5  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    25   8.5  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   8.5  

>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 29.9 bits (64), Expect = 0.23
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 428 CTRLELPIRYKFLSFESAIHFC*TQYLRFVLRFVYRLWP 312
           C    L +RY  L +   IH     YL F +  + R+WP
Sbjct: 30  CALAFLTLRYTLLCYSIPIHIHTVNYLAFTIARMKRVWP 68


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 252 LSASCCWSSAFLQRKSLLTFHSCIVNFGALG---GIHTKACSDSLVVAIGAPITLRMPNC 82
           LS+S C  SA     SLL+   C+  FG        HTKA SD + +A G    +     
Sbjct: 240 LSSSICSISANWSTLSLLSTEGCVYAFGRCDRAQKAHTKA-SDIVQIASGTEHNILRTKK 298

Query: 81  ASPILYSY 58
            S ++Y +
Sbjct: 299 GSVLIYGW 306


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 203 NDLRCRNAEDQQQLADR---ILGECKRVREETGERSEIMKATSDRRIEERIGDIEF--NK 367
           NDL     ++ + +  R   +L EC  +RE   E      A SD ++E  +  ++   + 
Sbjct: 495 NDLIAELQDELRGIESRLTSVLSECNMLRETASEEKNAFDAESD-KLERELQQLKLSSHN 553

Query: 368 SELQIQRKEICIELEA 415
           S LQ+ ++   I +EA
Sbjct: 554 SMLQLDQRIQSINIEA 569


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +2

Query: 200 SNDLRCRNAEDQQQ--LADRILGECK-RVREETGERSEIMKATSDRRIEERIGDIEFNKS 370
           +  LR  N+E Q+Q  +A   L   K ++     E S + +        + + DIE  K 
Sbjct: 121 NQSLRRANSELQEQSKIASEQLSIAKDQIEALQNENSHLGEQVQSAH--QALSDIEERKK 178

Query: 371 ELQIQRKEICIELEALGVYKTRLQDCLASLQANALNICRK 490
           +         ++ E L   K+ L   LASLQ++   +C K
Sbjct: 179 QHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEK 218


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 224 AEDQQQLADRILGECKRVREETGERSEIMKATSDRRIEERIGDIEFNKSELQI 382
           AE  +++A ++  ECKR++    +  E +K  +D R+E  +  +   +  L+I
Sbjct: 662 AEQSKEVA-KLQAECKRLQAINSKVMEEVKVYNDSRVEALLAKVSSLEETLKI 713


>SPAC688.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +2

Query: 182 IHEWKVSNDLRCRNAEDQQQLADRILGECKRVREETGERSEIMKATSDRRIEER 343
           I  WK+  ++ C N ED+  LA+R     +R++E+  ++ +  +   +++ E R
Sbjct: 114 ILSWKLF-EVACANPEDEALLAER----KQRLKEQREKKEQKKEQKKEKKTERR 162


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/91 (15%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
 Frame = +2

Query: 188 EWKVSNDLRCRNAEDQQQLADRILGECK-RVREETGERSEIMKATSDRRIEERIGDI--E 358
           +W++ ++    + E+ ++  D++L +   +V++E     E+M       ++E++ ++  E
Sbjct: 707 DWEMISNQDASDNEELERKLDKVLEDADAKVKDEESSEEELMNDEQMLALDEKLAEVFRE 766

Query: 359 FNKSELQIQRKEICIELEALGVYKTRLQDCL 451
             K+  + ++K      + +  +K ++ D +
Sbjct: 767 RKKASNKEKKKNAQETKQQIVQFKVKVIDLI 797


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 92  IRNVIGAPIATTRLSEQALVCIPPRAPKFTIHEWK 196
           I N+IG P   +  +   L  +    P F I  W+
Sbjct: 157 IGNIIGQPSVNSSAASMILGAVTVNRPDFVIQRWQ 191


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 480 IFKALACKEARQSCKRVLYTPRAS 409
           IF A  CK+ +++  R+LYT  A+
Sbjct: 248 IFHAPTCKQVQKAYARLLYTDSAA 271


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 164 RAPKFTIHEWKVSNDLRCRNAEDQQQLADRILGECKRVREETGE 295
           R P   I E K + D +     DQ+ ++ R     K++ + TGE
Sbjct: 616 RTPSDKISESKEAFDAKVEEISDQRAISQRYYELRKKMIDNTGE 659


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 306 ISDLSPVSSRTLLHSPRILSASCCWSS 226
           I+D SP+SS +     +++ A+C W++
Sbjct: 902 IADYSPISSLSGGQKVKVVIAACLWNN 928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,557
Number of Sequences: 5004
Number of extensions: 41594
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)