Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f06
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   1.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   2.0  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   3.5  
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo...    25   4.6  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    24   8.0  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 140 NLYLWCKILKSAEYLGPLRYANIT*TSILYT 232
           NL+LWCK L    +  P+    +    +L+T
Sbjct: 547 NLFLWCKQLVEINFKDPMLITRLISVLVLFT 577


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 281 CTLHVGADIHGFKLFVECTEYL 216
           C   +G D +G+KLFV   EY+
Sbjct: 698 CLPELGLDGYGYKLFVPINEYI 719


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 360 TFALAFDTLFIALVWFW 310
           TF L F  +F+A++W W
Sbjct: 674 TFFLLFAFIFVAVIWTW 690


>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 152 WCKILKSAEYLGPLRYANIT*TSILYTLQ 238
           W + L   +YL P+RYAN+    I Y LQ
Sbjct: 160 WIQHLAPFDYL-PVRYANVQSNLIKYWLQ 187


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 269 VGADIHGFKLFVECTEYLFMLC-*RIAKAPGIPLTSE 162
           V A + GF  + +  E+L MLC  RI++     LT+E
Sbjct: 389 VVAQLSGFSFYCKAIEFLQMLCQKRISRFKNGGLTAE 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,890
Number of Sequences: 5004
Number of extensions: 28488
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)