Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f06
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    28   3.0  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromat...    27   5.3  

>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 117 TIVSFPRSFFFQNIFSDIFYVTLKIY 40
           TI +F  S  F+N F DI + +LK+Y
Sbjct: 130 TIYAFLHSHMFENDFRDILHSSLKMY 155


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 248 NHVYLRQHAVCIATGPDPRPVQNQTSAI 331
           NH Y +QH     +   P+P+Q Q S+I
Sbjct: 737 NHQYQQQHPSLPRSASTPQPIQQQQSSI 764


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 248 NHVYLRQHAVCIATGPDPRPVQNQTSAI 331
           NH Y +QH     +   P+P+Q Q S+I
Sbjct: 737 NHQYQQQHPSLPRSASTPQPIQQQQSSI 764


>Z70210-6|CAA94152.1|  184|Caenorhabditis elegans Hypothetical
           protein K08H2.6 protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 107 ETIVTIHDLP*NLYLWCKILKSAEYLGPLRYANI 208
           +TI+ I   P  L+  CK    + +L PLR AN+
Sbjct: 123 KTIIGITKAPGELHFLCKFSDDSVHLIPLREANV 156


>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 99  RSFFFQNIFSDIFYVTLKIYISDLLFSTMT 10
           R+ FF  IF   FYV L +YI+DL  + MT
Sbjct: 302 RNSFFMIIFM-YFYVGLAVYITDLNGADMT 330


>AF056580-1|AAC78602.1|  184|Caenorhabditis elegans heterochromatin
           protein 1 homolog protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 107 ETIVTIHDLP*NLYLWCKILKSAEYLGPLRYANI 208
           +TI+ I   P  L+  CK    + +L PLR AN+
Sbjct: 123 KTIIGITKAPGELHFLCKFSDDSVHLIPLREANV 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,763,312
Number of Sequences: 27780
Number of extensions: 171718
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)