Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f06
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   9.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 349 CV*YTFYSTCLVLDRAGVGACGDAHCMLAQIYMVLSCL*SVQNTC 215
           CV        L+ + +G  + G   C L   + VLSC  S+ N C
Sbjct: 89  CVALLVMPMALLYEISGNWSFGTIMCDLWVSFDVLSCTASILNLC 133


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 97  PWKGNYSNNSRFTLKFIP 150
           P +GN   N+++ LKF P
Sbjct: 871 PLEGNLMINNKYALKFFP 888


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 GKETIVTIHDLP*NLYLWCKILKSAEYLGP 190
           G+  ++ ++++P +  + C+I    E+L P
Sbjct: 44  GQTPLIKLNNIPKSYGIKCEIYAKCEFLNP 73


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 224 LYTLQTA*NHVYLRQHAVCIATGPDPRPVQNQTSAIKSVSNARAN 358
           ++ + T  N + L   +    TGP P P   Q + +++++  R +
Sbjct: 361 IFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVS 405


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 334 FYSTCLVLDRAGVGACGDAHCMLAQIY 254
           F S C  LD   V   GDA+C+   ++
Sbjct: 523 FDSFCGQLDVYKVETIGDAYCVACGLH 549


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 309 TGRGSGPVAMHTACWRRY 256
           TG G GP   + A W  +
Sbjct: 563 TGLGKGPRTTYCAFWNEF 580


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 120 VTIVSFPRSFFFQNIFSDIFYVT 52
           V  + FP SF   NI   + YVT
Sbjct: 471 VARIVFPASFGLLNICYWVIYVT 493


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,361
Number of Sequences: 438
Number of extensions: 2302
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)