Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f05
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    83   5e-17
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    26   4.2  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   7.4  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.8  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    25   9.8  

>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 82.6 bits (195), Expect = 5e-17
 Identities = 43/102 (42%), Positives = 55/102 (53%)
 Frame = +3

Query: 270 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVMRX 449
           PP++I HGLLGSK NW S++K       R + ++D R HGDS      +Y  MA D  + 
Sbjct: 21  PPVLIFHGLLGSKRNWRSLAKKFSCKLDRDIYAIDQRCHGDSPCVAPLSYSAMALDAFQF 80

Query: 450 XXXXXXXXXXXXGHSMGGRTAMVLSLLCSDLVASLIVVDISP 575
                       GHSMG +TAMV +L   D V  L+VVD SP
Sbjct: 81  MKDHKLDKASIIGHSMGAKTAMVTALKWPDKVEKLVVVDNSP 122


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 137 FQ*FHKITQCQCPKMLEFYSIERRNSRFGLRFLREHFGL*KFITTSSSH 283
           FQ F+     + PK+ + + IE   +    R+  E FG  K I   S H
Sbjct: 93  FQSFYDQVYIETPKLHQVFGIEHNAAMEAGRYFYESFGNRKRIDYGSGH 141


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 270 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNH 386
           P  +  HGL+GS+N ++S+   I  + G  V++++ R++
Sbjct: 117 PVFIFSHGLVGSRNVYSSLCGTI-ASYGIVVLAMEHRDN 154


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 205  ALNAVEFQHLWTLTLSNFVELLKR 134
            A N +    LW+LT   +VELLK+
Sbjct: 1148 AYNYLLSMPLWSLTYERYVELLKK 1171


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 525 VIAPWQFGLPYCAQAVIPLTTLISLAAALHHE 430
           +IAP  FG PY  QA     T I+L  A   E
Sbjct: 111 IIAPRVFGAPYDEQAAKEAETAIALIFARFDE 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,582
Number of Sequences: 5004
Number of extensions: 47420
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)