Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24f05
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1587 + 38468956-38469090,38470599-38470742,38470819-384708... 53 2e-07
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 44 1e-04
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 40 0.001
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 40 0.002
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89... 31 1.1
11_06_0154 + 20707811-20708210,20709252-20709523 31 1.1
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 29 2.5
05_07_0315 - 29165965-29166472,29167378-29167769 29 4.4
11_06_0379 + 22933867-22933924,22934509-22934732 28 5.8
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 5.8
01_06_0328 + 28507942-28508610,28509669-28510826 28 7.7
>01_06_1587 +
38468956-38469090,38470599-38470742,38470819-38470845,
38470970-38471060,38471224-38471267,38471352-38471450,
38472233-38472331,38472545-38472646,38472758-38472823,
38472960-38473084,38473175-38473346,38473588-38473674
Length = 396
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +3
Query: 270 PPLVILHGLLGSKNNWNSMSKAIHRTTGR-KVISVDARNHGDS---RHSPQHTYVHMAHD 437
P V+LHG+LGS+ NW S +K + + + + VD R HGDS + HT A D
Sbjct: 117 PTAVLLHGILGSRKNWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALD 176
Query: 438 VMRXXXXXXXXXXXXXGHSMGGRTAMVLSLLCSDLVASLIVVDISPAK 581
V++ GHS GG+ +S + + V+D +P K
Sbjct: 177 VLKLIVQLRLTPRVLVGHSFGGK-GFPVSFVSPYHTFMVWVLDATPGK 223
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Frame = +3
Query: 282 ILHGLLGSKNNWNSMSKAI-----HRTTGR--KVISVDARNHGDSRH----SPQHTYVHM 428
+LHGLLGS NW S S+A+ R+ +++ VD RNHG S P H
Sbjct: 65 VLHGLLGSGRNWRSFSRALASELRDRSPSDEWRMVLVDLRNHGRSAGIKGLRPPHDMSTA 124
Query: 429 AHDVM-RXXXXXXXXXXXXXGHSMGGRTAMVLSLLCS 536
A D+ GHSMGG+ A+ + CS
Sbjct: 125 ARDLADLVKARGWAWPDVVVGHSMGGKVALDFAESCS 161
>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Frame = +3
Query: 276 LVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDS---RHSPQH------TYVHM 428
++ LHG LG+ +W M KA+ + +VI+VD HG+S +H ++ + +
Sbjct: 1483 ILFLHGFLGTSEDWVPMMKAL--SPSARVIAVDLPGHGESEILQHDVENSNQISFSVQSV 1540
Query: 429 AHDVMRXXXXXXXXXXXXXGHSMGGRTAMVLSLLCSDLVASLIVVDISP 575
A +++ G+SMG R A+ ++L + ++ +++ SP
Sbjct: 1541 ADLLLKLIRNITDGAVVVVGYSMGARIALHMALNQNHKISGAVIISGSP 1589
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Frame = +3
Query: 270 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQ----HTYVHMAHD 437
P +++HG +W +A+ G + ++ D R +GDS +PQ +T +H+ D
Sbjct: 30 PVALLVHGFPELWYSWRHQMRAL-AARGFRAVAPDLRGYGDS-DAPQGRDSYTVLHLVGD 87
Query: 438 VMRXXXXXXXXXXXXXGHSMGGRTAMVLSLLCSDLVASLIVVDISPAKTSPQI 596
++ GH G A L LL +DLV + + + + P++
Sbjct: 88 LVALIADLGRPQVFVAGHDWGAVVAWQLCLLRADLVTAHVSLSVEYQPRHPRM 140
>12_01_0117 +
893924-893971,894944-895003,895024-895174,895410-895884,
895974-896316,896347-896391,896533-896631,896708-896828,
897032-897255
Length = 521
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 273 PLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVD 374
P+V+LHG S +W + + + R G KV++ D
Sbjct: 164 PIVLLHGFGSSVFSWTHIMRPLARIAGAKVLAFD 197
>11_06_0154 + 20707811-20708210,20709252-20709523
Length = 223
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 440 NAAAKEIRVVKGITAWAQYGRPNCHG 517
N+ +K V G+ WA+ G+P CHG
Sbjct: 49 NSGSKRSEVGGGMRQWARRGQPRCHG 74
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 303 SKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQH 413
S+N+ + +S + H+ GRKVIS ++ N + QH
Sbjct: 250 SRNSGDDISSSFHKEQGRKVISRNSENDRVASFHKQH 286
>05_07_0315 - 29165965-29166472,29167378-29167769
Length = 299
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 2/102 (1%)
Frame = +3
Query: 276 LVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDV--MRX 449
+V+ HG S+ W+ + ++ ++ + D G + ++TY A ++ +
Sbjct: 29 VVLAHGYGASQAVWDKLVPSLSKSHNLLLFDWDFTGAGAGKDDDEYTYGRFADELIAVME 88
Query: 450 XXXXXXXXXXXXGHSMGGRTAMVLSLLCSDLVASLIVVDISP 575
HSM A + + DL A + +V SP
Sbjct: 89 ERGVGASGAVVVAHSMSAMAACIAAQRRPDLFAHIFLVCASP 130
>11_06_0379 + 22933867-22933924,22934509-22934732
Length = 93
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 510 AMVLSLLCSDLVASLIVVDISPAKTSPQIFSMATL 614
++ L + CSD+ +I+ D P+ T+PQ S ++
Sbjct: 11 SLALVVQCSDMARKVIMADEEPSSTNPQDSSCGSI 45
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +3
Query: 351 GRKVISVDARNHGDSRHSPQHTY---VHMAHDVMRXXXXXXXXXXXXXGHSMGGRTAMVL 521
G +V D R G S P +Y V MA D + GHSMG + L
Sbjct: 78 GIEVCCFDNRGVGRSSVLPHKSYYSTVIMARDALALMDHLGWKKAHVFGHSMGAMISCKL 137
Query: 522 SLLCSDLVASLIVVDIS 572
+ + + SL +++++
Sbjct: 138 AAMAPHRICSLALLNVT 154
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 291 GLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHM 428
G + SK++ S I G + ++DA + S + PQ Y H+
Sbjct: 500 GAISSKSDVYSYGMMILEMVGARERNIDANSESSSHYFPQWIYEHL 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,161
Number of Sequences: 37544
Number of extensions: 308739
Number of successful extensions: 755
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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