Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24f05
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical pr...    87   8e-18
Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical pr...    59   2e-09
Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AC024750-4|AAF60438.2|  339|Caenorhabditis elegans Seven tm rece...    29   3.9  

>Z81105-4|CAB03219.1|  299|Caenorhabditis elegans Hypothetical
           protein R05D7.4 protein.
          Length = 299

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 49/129 (37%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
 Frame = +3

Query: 273 PLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVM--- 443
           PLVI+HGL G K NWNS+ KA+H+     V +VD RNHG S H+   +Y  MA D++   
Sbjct: 47  PLVIVHGLFGQKQNWNSVGKALHKKLEAPVYAVDVRNHGSSPHTETMSYTEMAEDLVLFI 106

Query: 444 -RXXXXXXXXXXXXXGHSMGGRTAMVLSL--LCSDLVASLIVVDISPAKTSPQIFSMATL 614
            +             GHSMGG+  M L++    SD +  LIV D+SP   S +      L
Sbjct: 107 DKVKEETKKTRVNLLGHSMGGKIVMRLAIDSKWSDRIEKLIVEDVSPKGYSRRHLEFREL 166

Query: 615 FDAMTAVSI 641
              M  V +
Sbjct: 167 IKTMRNVDL 175


>Z81522-7|CAB04232.1|  297|Caenorhabditis elegans Hypothetical
           protein F32B4.6 protein.
          Length = 297

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
 Frame = +3

Query: 273 PLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQHTYVHMAHDVMR-- 446
           PL+++ GL G+K NW  + K + +  G  V +V+ RNHG    +   TY  MA D++   
Sbjct: 37  PLILVPGLFGTKENWIQVGKDLSQRLGCMVFAVENRNHGSFSKAASMTYEEMADDLVGFI 96

Query: 447 --XXXXXXXXXXXXXGHSMGGR--TAMVLSLLCSDLVASLIVVDISP 575
                          GHSMGG+  T +  +   S  + SLIV D+SP
Sbjct: 97  DWVRKITGEDKVNLHGHSMGGKAVTQLATTPEYSSRIKSLIVEDMSP 143


>Z19152-9|CAC35809.1|  364|Caenorhabditis elegans Hypothetical
           protein B0464.9 protein.
          Length = 364

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
 Frame = +3

Query: 270 PPLVILHGLLGSKNNWNSMSKAIHRTTGRKVISVDARNHGDSRHSPQH-----TYVHMAH 434
           P   +LHG   S   W   +K +      +V++ D R HGD++ S +H     T +    
Sbjct: 85  PIFYLLHGGGYSGLTWACFAKELATLISCRVVAPDLRGHGDTKCSDEHDLSKETQIKDIG 144

Query: 435 DVMRXXXXXXXXXXXXXGHSMGGRTAM--VLSLLCSDLVASLIVVDI 569
            + +             GHSMGG  A+  + + + S  VA+LIV+D+
Sbjct: 145 AIFKNIFGEDDSPVCIVGHSMGGALAIHTLNAKMISSKVAALIVIDV 191


>AC024750-4|AAF60438.2|  339|Caenorhabditis elegans Seven tm
           receptor protein 173 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 142 LKRVKKFFGPNILSSIFIR*LNL-ILVTKSLKVML*FRHLFLTLVLC 5
           +K V +F   ++  SIFI  L++ ++VTKS K+M  +RHL +    C
Sbjct: 9   IKTVIQFI--SVFISIFINALSIYLIVTKSPKIMGTYRHLMIYFCGC 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,305
Number of Sequences: 27780
Number of extensions: 269987
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)