Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e19
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    31   0.099
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   1.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   3.7  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 31.5 bits (68), Expect = 0.099
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 488 PLTSGKKYRRHRMYTWWIPSVFACRSSVERMLLTHLTAITIEPVWMLESLRQITR 324
           PL++G  + R R + WW+P +       E ++    TA    P W  ++   ++R
Sbjct: 102 PLSNGSGHARSRSHAWWLPYIVVEFDKNEILVDALNTASLENPCWDYQATFDVSR 156


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 340 FGRLHVINRSDVLRSGFLISSCNFE 266
           FGR  V N    L  GF I+SCN +
Sbjct: 9   FGRRSVYNLKKCLHKGFQINSCNIK 33


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 183  SGNQEINNTVNGA 221
            SGNQ+INNT NG+
Sbjct: 1015 SGNQDINNTSNGS 1027


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,839
Number of Sequences: 5004
Number of extensions: 48062
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)