Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e19
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    29   2.9  
12_01_0088 - 698169-698614,699514-700819,703041-703148                 29   2.9  
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259...    29   3.8  
12_02_0307 - 17311673-17312032                                         28   5.0  
03_04_0050 + 16847849-16847978,16848744-16848898,16849207-16849440     28   6.6  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    28   6.6  
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128...    27   8.7  

>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 547 MPVLRL*LRYMPAAARRFVNL*PAGKNTEDTECI--PGG 437
           +P L L +   PAAAR+F ++  +G+N  D + +  PGG
Sbjct: 20  LPFLHLVVPGTPAAARKFSDVLASGRNVSDGDVLVSPGG 58


>12_01_0088 - 698169-698614,699514-700819,703041-703148
          Length = 619

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 189 NQEINNTVNGAQEMQPGFCSATCVNRSKLQEEIKKPDLKTSDLFITCNLPKRFE 350
           N + +NT+  A    P    A C N S+ QEE + P  KT+ + IT  L K  +
Sbjct: 296 NHDDHNTIAHATAPPPPLPLA-CSNSSEEQEEEEAPAAKTTGMAITGKLNKEHD 348


>02_04_0067 - 19425019-19425288,19425393-19425647,19425766-19425937,
            19426069-19426302,19426523-19426656,19427663-19427746,
            19428355-19428645,19428788-19429120,19429317-19429390,
            19429464-19429644,19429993-19430096,19430232-19430392,
            19430727-19431040,19431583-19431864,19432431-19432732,
            19433176-19433266,19433368-19433421,19438917-19438993,
            19439081-19439240,19439410-19439494,19439574-19440130
          Length = 1404

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 246  SATCVNRSKLQEEIKKPDLKTSDLFITCNLPKRF 347
            S  C ++  L + + KP L TSDL      P++F
Sbjct: 1091 STMCKDKDALVKSLSKPALGTSDLHFPTRFPQKF 1124


>12_02_0307 - 17311673-17312032
          Length = 119

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 497 PSCCRRHVPQLQPQHRHGSRFVSLRK 574
           P C RR  P  QP HR GS   +LR+
Sbjct: 92  PLCLRRVPPTQQPPHRPGSGPTALRR 117


>03_04_0050 + 16847849-16847978,16848744-16848898,16849207-16849440
          Length = 172

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +2

Query: 455 GVFCIFSRWSEVHKPSCCRRHVPQLQPQHRHGSRFVS-LRKVF 580
           G+FC+  R       SC    VP + P    GS   S LRK+F
Sbjct: 13  GLFCLAWRLGYAELASCLFHAVPMMAPPRHRGSITSSVLRKMF 55


>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
            42543601-42543744,42543840-42544013,42544056-42544369,
            42544467-42544636,42544916-42545043,42545125-42545185,
            42545473-42545642,42545783-42547387,42547479-42547631,
            42547747-42547905,42548066-42548236,42548357-42548404,
            42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 361  GSMVMAVK*VRSIRSTELRQANTDGIHQVYIRCLLYFFP 477
            GSM   +K V  I ST L   +TD   +  + CL +F P
Sbjct: 938  GSMREILKTVTFISSTSLCDQHTDDDKKFQVSCLQFFLP 976


>11_06_0062 +
           19709801-19710832,19712383-19712568,19712661-19712867,
           19712940-19713078,19713172-19713380,19713520-19714134
          Length = 795

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 274 YKKKLKNPILKHQTCLSRVICRRDSS 351
           Y++KLK  +L+ Q+ LSR+   RD +
Sbjct: 705 YREKLKEQVLEKQSSLSRIGASRDEN 730


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,879
Number of Sequences: 37544
Number of extensions: 293241
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)