Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e08
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     29   2.8  
07_01_1106 - 10187609-10190041,10190292-10191932                       28   6.6  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     27   8.7  

>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +1

Query: 163 IGEVVRNLNNKSTVSDYILVPFNDPDVGTALITRTADDFICSL-TTLTTSGGKDCPENSL 339
           +GE+VR + N++   D +LV  +DP  G A +     D   +L T          P  +L
Sbjct: 218 VGELVRVVANETLPCDMVLVSTSDP-TGVAYVQTINLDGESNLKTRYAKQETMSTPPEAL 276

Query: 340 AGIEHALRVSDPESTIYVF 396
           AG+   ++   P   IY F
Sbjct: 277 AGL---IKCEKPNRNIYGF 292


>07_01_1106 - 10187609-10190041,10190292-10191932
          Length = 1357

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 118  TTESMDDEINIIKANIGEVVRNLNNKSTVSDYILVPFNDPDVGTALITRTADDFICSLTT 297
            ++E M+DE +   AN  +V++NL   +++ +  +   N P  G +      D  +C L +
Sbjct: 1111 SSEEMEDESDKEIAN--QVLQNLQPNTSIQELAIQ--NYP--GNSFPNWIKDSGLCMLVS 1164

Query: 298  LTTSGGKDCPE 330
            +T    +DC E
Sbjct: 1165 ITIDNSQDCNE 1175


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 436 VLDLCTNKYSQVHIILTGVCYMSARNSAG 522
           VLDL T+   +VH++L  +  M A N +G
Sbjct: 719 VLDLATSANEEVHVVLRRLVKMFANNLSG 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,681
Number of Sequences: 37544
Number of extensions: 351129
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)