Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e08
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.2  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 499 MSARNSAGRLDLYYEVARACGGVVLQFESAHNLR 600
           + A+N   R  L+  V R C G  +  E   NLR
Sbjct: 311 LKAKNMENRFPLFTTVHRICIGETMPMELIENLR 344


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 586 LTRTAVQLHHKPSRLHNTSQGDQR 515
           L  TAVQ HH+P +     Q  Q+
Sbjct: 151 LQSTAVQDHHRPYQQQQQQQQRQQ 174


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 509 EIPLVALTCIMKSRGLVVELY 571
           + PL+ L  I KS G+  E+Y
Sbjct: 45  QTPLIKLNNIPKSYGIKCEIY 65


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 175 VRNLNNKSTVSDY 213
           + +LNN+ST SD+
Sbjct: 317 IADLNNQSTASDF 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,307
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)