Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24e06
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 68 3e-17
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.53
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 29 0.70
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.7
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 6.5
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 25 6.5
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 25 6.5
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 25 6.5
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 8.6
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 67.7 bits (158), Expect(2) = 3e-17
Identities = 30/107 (28%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Frame = +3
Query: 195 NAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADE 374
+ + ++ ++++ LY+++ L+ LEKA+ +D V ++ + C L+ Q++ F + +
Sbjct: 21 HTKNQQVREDLSILYSILVALEQLEKAFTKDAVSTSDFNSTCELLIQQWESCFSDERVTQ 80
Query: 375 -FPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEIVS 512
F + E F +KYRL CP A++RI+E I D++ +N + +S
Sbjct: 81 AFGSFEDFCSKYRLQCPRAIKRIQEG----ISDERSQSNSTFSNAIS 123
Score = 35.9 bits (79), Expect(2) = 3e-17
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +3
Query: 489 KYIAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRL 611
K IA +V FIT +D +RL F A D + P L +L +MD L
Sbjct: 155 KSIAGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDL 195
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.53
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 408 CI*QQKLQYWETHQPVLV*KPLCTARGDDCMPPCIPVLAHNHACMP 271
C Q+K ++ + P P RG DC PC P+L H C P
Sbjct: 261 CGKQEKPEFVKNLVPHSCGDPCGKTRGQDCEHPC-PLLCHPGPCPP 305
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 0.70
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -3
Query: 517 NNDTISAMYLLVFPLSSLMRFGLFSLIRSKAAGQSNLYLATKASILGNSS 368
+NDT S ++ PLS LFSL+RSK + LYL T ++L S+
Sbjct: 217 SNDTQSCKLIVSLPLSQEECEVLFSLLRSK---KEPLYLNTLLALLVESN 263
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 214 SMITWLSSMLSSVPFSTW 267
+M+ W S S+VPFS+W
Sbjct: 419 NMVFWSKSSSSTVPFSSW 436
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 350 SHFVLHEETTACRRVFLCSHTITHVCLLQVLKGTDDSIEL 231
S+F L++E CRR+ C+H C+ Q L + +S L
Sbjct: 530 SNFELNDE---CRRLKQCNHFFHRECIDQWLTSSQNSCPL 566
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 375 FPNIEAFVAKYRLDCPAALERIRE 446
+PN + + +DCPA+L + E
Sbjct: 85 YPNSNVILLCFSIDCPASLNNVTE 108
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -3
Query: 214 FSRSRAFLYNLISSYNSGRVSCIFIISSQIYXXXXXXXXXXHEKP 80
F FLY L SY + IF+I+ Q++ +KP
Sbjct: 152 FMVKNEFLYRLSPSYICSIIDWIFVIAQQLHIDFASFEFKILKKP 196
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 402 KYRLDCPAALERIRENKPNLIKDDKGNTNKYIAE 503
K LD +A + +++NK N ++ + N +KYI E
Sbjct: 142 KSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +3
Query: 183 KLYKNAREREKHDNMAELYAVVCTLQHL-EKAYMRDCVRAQEYTAACSRLLVQYKVA 350
KLY A E K+D A+ ++ Q+L E + A E S + YK A
Sbjct: 913 KLYPRALELYKYDKEAQKEVLIIFAQYLRENGKSNEAAIAYESVGKISEAIEAYKSA 969
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,492
Number of Sequences: 5004
Number of extensions: 49205
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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