Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e06
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0927 + 33082645-33083286                                         92   3e-19
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552...    29   2.2  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    29   2.9  
04_04_0561 - 26250488-26251451,26251499-26251620                       29   3.8  

>01_06_0927 + 33082645-33083286
          Length = 213

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 55/156 (35%), Positives = 84/156 (53%), Gaps = 11/156 (7%)
 Frame = +3

Query: 177 EIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFK 356
           E+KL+ + RERE  +++A+LYA++   + LE+AY+RD V A +Y A C +L+ Q+     
Sbjct: 2   EVKLWNDKRERELLESLADLYAIIKATEKLERAYVRDLVSAADYEAECLKLISQFNSLSS 61

Query: 357 QVQADEFPNIEAFVAKYRLDCPAALER-IRENKPNLIK----------DDKGNTNKYIAE 503
            +       I  FV  YRLDCPAAL R ++   P  ++               +   IA+
Sbjct: 62  SLAG--VVTIPRFVEAYRLDCPAALNRLVQSGVPATVELRAAASSSAPASSAASAAAIAQ 119

Query: 504 IVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRL 611
            V  FIT MD ++L   A D ++P L DL  +M +L
Sbjct: 120 CVQSFITAMDAVKLNMLANDQVRPLLHDLSTSMGKL 155


>07_03_0696 -
           20754773-20754821,20754930-20755028,20755107-20755226,
           20755317-20755402,20756013-20756109,20756181-20756268,
           20756358-20756454,20756797-20756892,20757029-20757125,
           20757571-20757689,20758559-20758616,20758751-20758857
          Length = 370

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 237 YAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEF-----PNIEAFVA 401
           +AVVC + +LE  Y+RD   A E+ A   R ++  +   K+V  D +     P+ +    
Sbjct: 296 WAVVCDVWYLEPQYLRDGETAIEF-AERVRDMIAARAGLKKVPWDGYLKHNRPSPKHTEE 354

Query: 402 KYRLDCPAALERIREN 449
           K R+   + L R+ E+
Sbjct: 355 KQRIFADSVLRRLEES 370


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 223  TWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCSTKWL 351
            T L+  LSSV    W  +    +C+HR       VS+   +W+
Sbjct: 2300 TQLTGKLSSVQLPPWAENPVDFICKHRKALESDYVSAHLHEWI 2342


>04_04_0561 - 26250488-26251451,26251499-26251620
          Length = 361

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 223 TWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVVSSCST 342
           TW +S++ S P  TW+R  C+        R   + +S  T
Sbjct: 12  TWTTSLILSTPSHTWQRSLCLPASRSFTPRTREIPTSPPT 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,038,820
Number of Sequences: 37544
Number of extensions: 309744
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)