Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24e06
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-11|CAB54493.1| 210|Caenorhabditis elegans Hypothetical... 144 3e-35
U27312-11|AAA68254.1| 461|Caenorhabditis elegans Forkhead trans... 30 1.5
AC025715-8|AAK68439.2| 531|Caenorhabditis elegans Enhanced rnai... 29 2.6
Z73973-1|CAA98266.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z19555-6|CAJ15163.1| 187|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z99281-55|CAN99710.1| 74|Caenorhabditis elegans Hypothetical p... 27 8.0
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 8.0
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 8.0
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 8.0
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 8.0
AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical ... 27 8.0
>AL110500-11|CAB54493.1| 210|Caenorhabditis elegans Hypothetical
protein Y87G2A.10 protein.
Length = 210
Score = 144 bits (350), Expect = 3e-35
Identities = 72/153 (47%), Positives = 100/153 (65%)
Frame = +3
Query: 147 MQDTRPELYEEIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSR 326
M L E++L++N ERE+ +N++EL+AV+ L+HLEK + RD V A EY + C +
Sbjct: 1 MSSQNANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFK 60
Query: 327 LLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEI 506
L+ QYKV + V +IE F KYRL CPAA+ERIRE +P +KDD+GN K+IA I
Sbjct: 61 LIDQYKVTMRLVHGAT--SIEDFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASI 118
Query: 507 VSLFITLMDKLRLEFRAMDMIQPELRDLRDTMD 605
V FIT +D LRL RA+D + P L DL + ++
Sbjct: 119 VEQFITFLDALRLNTRAVDDLYPGLDDLYNAIN 151
>U27312-11|AAA68254.1| 461|Caenorhabditis elegans Forkhead
transcription factor familyprotein 5 protein.
Length = 461
Score = 29.9 bits (64), Expect = 1.5
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Frame = -2
Query: 512 RYNFCNVFISVPFVI--LDEIRFVLSYSFQSSRTV*---PVFSNKSFNIGKLISLYLFES 348
+Y +F S+ FV + E FV+S + S+++ +F + + I K S YL+ +
Sbjct: 2 QYALTVIFQSILFVQCQVGEAAFVISQEHEVSKSISINMTLFPSIKWIIHK--SFYLYLT 59
Query: 347 HFVLHEETTACRRV---FLCSHTITHVCLLQVLKGTDDSIELSHVIM 216
+FV+ ++T C + + SH++ V + K T SI S M
Sbjct: 60 YFVMSQQTLPCFQAADSYNYSHSLPKVQFARFSKYTPQSISYSSTQM 106
>AC025715-8|AAK68439.2| 531|Caenorhabditis elegans Enhanced rnai
(rna interference)protein 5 protein.
Length = 531
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +3
Query: 330 LVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTN-----KY 494
LV ++ Q EF NI + AK+++ R ++P+L+ + G N K
Sbjct: 139 LVHLSDSWTDTQCTEFRNIVSKFAKFQITANQCDVDFRSDRPSLLVNLYGLPNGTEIDKK 198
Query: 495 IAEIVSLFITLMDKLRLEFRAMDMIQPELRDLRDTMDRL 611
+A +++ + + +F M+ P+L +L D L
Sbjct: 199 VAIEEICAVSMQNVMVSQFPTNFMVNPKLEELDKEQDHL 237
>Z73973-1|CAA98266.1| 357|Caenorhabditis elegans Hypothetical
protein F25D1.2 protein.
Length = 357
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 392 SFNIGKLISLYLFESHFV-LHEETTACRRVFLCSHTITHVCLLQ 264
+F IGK I+ H V LHEE C R+ L I+ + + Q
Sbjct: 38 AFPIGKFIATCFLSFHEVKLHEELDKCARLLLLGAIISAIPIFQ 81
>Z19555-6|CAJ15163.1| 187|Caenorhabditis elegans Hypothetical
protein F02A9.7 protein.
Length = 187
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 224 VIMLFSFTRIFVQFNLFIQFRTCILHLYYFFTDL*QSQYQIMKQTRETS 78
+I++F+ + QF+LFI C + + F D Y IM+ T + S
Sbjct: 4 LILIFTLPTVISQFHLFIVI-NCDSYCHVTFRDNEMQYYSIMENTAQIS 51
>Z77661-8|CAB01189.1| 438|Caenorhabditis elegans Hypothetical
protein F40G12.10 protein.
Length = 438
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 288 CVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRE 446
C Y A + +A +++QA E PNI+ R PAA+E + +
Sbjct: 336 CAIVSNYGAGRAGSFFVAVLAIEKLQAGEAPNIKEIALSVRSQRPAAIETLSQ 388
>Z99281-55|CAN99710.1| 74|Caenorhabditis elegans Hypothetical
protein Y57G11C.12a protein.
Length = 74
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 351 FKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIK 467
F+Q+ AD NI F++ + L C L + +K NL++
Sbjct: 20 FEQIIADNIKNIANFLSSFELSCRTKLATL-SDKLNLLE 57
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
K02C4.3 protein.
Length = 1307
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 177 EIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRD 287
E L KN R D + E+ + VC + H K+Y ++
Sbjct: 1168 EFHLSKNERRVRFEDIIREVVSSVCIIHHWSKSYSKE 1204
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 339 YKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNL 461
YK+ ++Q+ +D++ +E + L CP R N L
Sbjct: 2149 YKIRYQQIPSDDWKEVEKGIKDPLLQCPGESPRFCYNATGL 2189
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 339 YKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNL 461
YK+ ++Q+ +D++ +E + L CP R N L
Sbjct: 2149 YKIRYQQIPSDDWKEVEKGIKDPLLQCPGESPRFCYNATGL 2189
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 339 YKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNL 461
YK+ ++Q+ +D++ +E + L CP R N L
Sbjct: 2149 YKIRYQQIPSDDWKEVEKGIKDPLLQCPGESPRFCYNATGL 2189
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +3
Query: 339 YKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNL 461
YK+ ++Q+ +D++ +E + L CP R N L
Sbjct: 2149 YKIRYQQIPSDDWKEVEKGIKDPLLQCPGESPRFCYNATGL 2189
>AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical
protein Y119C1B.9 protein.
Length = 264
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 178 RLNCTKMRVNEKSMITWLSSMLSSVPFSTWRRHTCVIVCEHRNTRRHAVV--SSCSTKWL 351
+L C+ + + I W+ SV + WR C EH+N ++ ++ S+C +
Sbjct: 60 KLYCSFTSLPQPVQIQWMFRPSDSVN-AQWREFPCAKKEEHKNCQKEEIIVESNCEVRMN 118
Query: 352 SNK 360
S K
Sbjct: 119 SLK 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,522,705
Number of Sequences: 27780
Number of extensions: 290827
Number of successful extensions: 817
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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