Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e03
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665...    28   6.5  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   6.5  
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478...    28   6.5  

>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
            13166756-13170655
          Length = 1415

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 415  LSYIHTEKCPFIYLETLTKQVKDGSSYGEKNSIQQCLHICWSCTENIYKKCCGIPA 582
            ++++H E  PF+     +  +   S+  E  S+   LH C S    I +KC G+ A
Sbjct: 1179 VTHVHNELLPFLLSNLTSLSIFAISNSPELTSL--VLHSCTSLETLIIEKCVGLSA 1232


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 505  NSIQQCLHICWSCTENIYKKCCGIPAKWPH 594
            N ++Q  + C++C   + K CC + AK  H
Sbjct: 1603 NFMEQHWYFCYTCDLTVSKGCCSVCAKVCH 1632


>06_02_0320 -
           14347195-14347443,14347573-14347674,14347747-14347851,
           14347938-14348084,14348171-14348290,14348743-14348878,
           14349198-14349328,14350854-14350928,14351040-14351139,
           14351213-14351385,14351474-14351581,14351674-14351791,
           14353477-14353970
          Length = 685

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 354 SLICDVLDEHTNVLPHRR--RCQPKRGRSGIREGQ-WFD 247
           + +  + DEH NV+P+ +   C  K G +G+  G+ WF+
Sbjct: 262 AFVAQIRDEHENVMPNIQIADCGHKIGLNGVDNGRIWFN 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,256
Number of Sequences: 37544
Number of extensions: 312427
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)