Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24e01
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.0  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   5.2  
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo...    25   5.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.9  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    25   6.9  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   9.1  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   9.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   9.1  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = -1

Query: 442  WTTARSAEPSSAASDT-----AVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGT 278
            W+++   +PS+AAS T     ++ TA V    +S+VA   SA  +   +I+ + V  + T
Sbjct: 956  WSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVAT-ASATDSSTSSIAAASVTGSST 1014

Query: 277  NLTA 266
            +  A
Sbjct: 1015 SSVA 1018


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 287  NRDQLDRSNPFYRPGDRMGQT*APDNPNSNYVQACPIAAINFQLILNTETW 135
            N  +LDRS   YR   +  QT    +P+S+  +  P   I F+L+L T+ +
Sbjct: 970  NAARLDRSGDSYRTV-KSNQT-VYIHPSSSVAEKKPKVIIYFELVLTTKEY 1018


>SPAC2F3.02 |||ER protein translocation subcomplex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -3

Query: 242 DRMGQT*APDNPNSNYVQACPIAAINFQLILNTETWTVSILT 117
           ++M QT         Y +A  +  +  QL LN  TW  SILT
Sbjct: 63  NKMKQTANEAFKRKKYEEAKKLYGLALQLALNRCTWEPSILT 104


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 210 PKQQLRTGMSNC-GD*LPIDFKYGNLDSFDINNSL 109
           P  Q+    SN  G  LP+D  Y N  SF ++ SL
Sbjct: 549 PSSQVEKSTSNSKGSMLPLDTLYNNKLSFRLDESL 583


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 182 DMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 313
           D P  + C  C+ P  G C       D C  V   C H   A+C
Sbjct: 17  DTPKDDVCGICRVPFDGCCPQCTSPGDNCPIVWGKCKHIFHAHC 60


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 165 LPIDFKYGNLDSFDIN 118
           +P+DF  GN+ +FDI+
Sbjct: 9   IPLDFDLGNMAAFDIS 24


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 221 PMSGPCGPLAYRMDCCGQVGPCCVHARGAY 310
           P  G CG + Y    C  VG  C+++   Y
Sbjct: 28  PRYGTCGGIYYDGPTCCVVGSSCIYSNPWY 57


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 263  CCGQVGPCCVHARGAYCSASCW 328
            CC Q G   V+  G+  +  CW
Sbjct: 1164 CCYQFGAVFVNGEGSMVNKECW 1185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,804
Number of Sequences: 5004
Number of extensions: 35055
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)