Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24e01
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1176 + 10112257-10113126 32 0.32
07_01_0622 - 4625246-4627759 29 1.7
04_03_0221 + 12890347-12890432,12890712-12890844,12891581-128916... 28 4.0
02_05_0207 + 26778403-26778927 28 4.0
01_06_1229 + 35551522-35552169 28 4.0
08_02_0899 + 22401302-22401694 28 5.3
01_04_0074 + 15760667-15761815 28 5.3
12_01_0373 + 2897874-2898911 27 7.0
06_03_0395 - 20354713-20355570 27 7.0
06_02_0011 - 10569471-10572245 27 7.0
02_04_0216 + 20986231-20988021 27 7.0
01_06_1217 + 35485182-35485949 27 7.0
02_02_0156 - 7277793-7277875,7278535-7278638,7278808-7279211,727... 27 9.2
>06_01_1176 + 10112257-10113126
Length = 289
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -1
Query: 472 SFALHYLCAPWTTARS-----AEPSSAASDTAVPTAVVRAG 365
SFA H + P+ ARS A ++AA+D A PTAV+ AG
Sbjct: 219 SFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAG 259
>07_01_0622 - 4625246-4627759
Length = 837
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 177 NWTCLYVIAVWVVRGLCLAH 236
NW+ Y IA+ V RGLC H
Sbjct: 632 NWSTRYQIAIGVARGLCYLH 651
>04_03_0221 +
12890347-12890432,12890712-12890844,12891581-12891607,
12892285-12892650
Length = 203
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 500 FIQF*LDSHFFCVT-LFMRTMDHSKKRRALQCSLRYSRAHSCS 375
FI + LD+H CV T+ R + C+LR R+ SCS
Sbjct: 145 FIAWCLDNHSDCVDEATFLTLARPADRDFIPCTLRLDRSSSCS 187
>02_05_0207 + 26778403-26778927
Length = 174
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 469 FALHYLCAPWTTARSAEPSSAASDTAVPTAVV--RAGYSSTVAV 344
F+LH + A + S P++A D+++P+AVV R G S++ +
Sbjct: 9 FSLHVVLAGLPPSMSLAPAAARHDSSLPSAVVVARVGPLSSIVL 52
>01_06_1229 + 35551522-35552169
Length = 215
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 281 PCCVHARGAYCSASCWQCGDMHGYRGGVAGSY 376
PCCV + SC+ ++HG G GSY
Sbjct: 186 PCCVFVQET--DPSCYSVCNVHGEESGAQGSY 215
>08_02_0899 + 22401302-22401694
Length = 130
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +2
Query: 173 PQLDMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 313
P D+ V L G +G P +Y CC GPC V G C
Sbjct: 14 PVGDLQVAKLALLVAG--NGFISPSSYLRRCCDDDGPCFVDGAGERC 58
>01_04_0074 + 15760667-15761815
Length = 382
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 156 QLEVNRRNWTCLYVIAVWVVRGL-CLAHAVPWPIEWIAAVKLVPVACTREVLIVQHRVGS 332
+LE + W+ + +++ G L H P+ ++W A ++ RE++ + RV S
Sbjct: 281 RLESRHQQWSMTHSLSMIDAFGRGTLVHGDPFSVDWSADYGMLSFDLEREIVFLHDRVSS 340
>12_01_0373 + 2897874-2898911
Length = 345
Score = 27.5 bits (58), Expect = 7.0
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -1
Query: 433 ARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTAA 263
A +A PSS++SDT T T A + T C T STS T++TAA
Sbjct: 257 ALAAVPSSSSSDTTTTT---------TAAATTTTSDTSCSTASTSTTSNGATSVTAA 304
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 170 SPQLDMPVRNCCLGCQGP---MSGPCGPLAYRMDCC 268
+P L+ P CC C+GP ++ G + + CC
Sbjct: 132 APPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>06_02_0011 - 10569471-10572245
Length = 924
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 481 IHISFALHYLCAPWTTARSAEPSSAASDT 395
+H+ A+H LC + A S P + DT
Sbjct: 556 VHVLIAIHVLCGMASPASSVSPQNRTEDT 584
>02_04_0216 + 20986231-20988021
Length = 596
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 454 LCAPWTTARSAEPSSAASDTAVPTAVVRA 368
L PW A +A P+SAA+ +AV V A
Sbjct: 5 LTPPWPAAAAAAPASAAAASAVTVEAVLA 33
>01_06_1217 + 35485182-35485949
Length = 255
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 445 PWTTARSAEPSSAASDTAVPTAVVRAGYS 359
PW R + PSSAA+ + TA+ A S
Sbjct: 4 PWVKTRPSSPSSAAASPSPSTALAAAAAS 32
>02_02_0156 -
7277793-7277875,7278535-7278638,7278808-7279211,
7279403-7279543,7279700-7279904,7279984-7280093
Length = 348
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -3
Query: 452 MRTMDHSKKRRALQCSLRYSRAHSCSTSRLLLHGSRAYLRTANTMLNNKHLSRARNRDQL 273
M+T ++ A + R SR+HS T +H L+T NT+ HL +++
Sbjct: 14 MQTGHDNRAMSATALNERSSRSHSVVT----IHVRGQDLKTGNTLRGALHLVDLAGSERV 69
Query: 272 DRS 264
DRS
Sbjct: 70 DRS 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,106
Number of Sequences: 37544
Number of extensions: 253944
Number of successful extensions: 813
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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