Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24e01
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 33 0.13
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 33 0.13
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 31 0.38
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical ... 29 1.5
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 2.0
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 2.7
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 3.6
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 27 6.2
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 8.2
AF016681-15|AAB66168.1| 172|Caenorhabditis elegans Hypothetical... 27 8.2
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 36.7 bits (81), Expect = 0.010
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQC 334
C GC G G CG R CC CC R C+ C C
Sbjct: 72 CCGCGGGGGGGCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCC 115
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQC 334
C GC G G CG R CC CC R C+ C C
Sbjct: 72 CCGCGGG-GGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCC 114
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQC 334
C GC G G CG R CC CC R C+ C C
Sbjct: 73 CCGCGGG-GGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCC 115
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQC 334
C GC G G CG R CC CC R C+ C C
Sbjct: 74 CCGCGGG-GGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCC 116
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGP--CCVHARGAYCSASCWQC 334
C GC G G CG R CC P CC R C+ C C
Sbjct: 54 CCGCGGG-GGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCC 98
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 200 CCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQCG 337
CC C+ C CC PCC G C C CG
Sbjct: 73 CCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGC-GCGCGCGCCGCG 117
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGP--CCVHARGAYCSASCWQC 334
C GC G G CG R CC P CC R C+ C C
Sbjct: 56 CCGCGGG-GGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCC 100
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 200 CCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQCG 337
CC C+ C CC PCC G C C CG
Sbjct: 75 CCCCCRPKCCCTCCRTCCCTRCCTCCRPCCC---GCGCGCGCCGCG 117
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +2
Query: 203 CLGCQGPMSGPCGPLAYRMDCCGQVGP--CCVHARGAYCSASCWQC 334
C GC G G CG R CC P CC R C+ C C
Sbjct: 59 CCGCGGG-GGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCC 103
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 200 CCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSASCWQCG 337
CC C+ C CC PCC G C C CG
Sbjct: 78 CCCCCRPKCCCTCCRTCCCTRCCTCCRPCCC---GCGCGCGCCGCG 120
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +2
Query: 221 PMSGPCGPLAYRMDCCGQVG---PCCVHARGAYCSASCWQCGDMHGYRGGVAG 370
PM PC P C V PC V CS C CG GY GG G
Sbjct: 259 PMPIPCPPPPPACSCPPPVTMYQPCMVPQYVPRCSGGCGGCGG--GYGGGYGG 309
>AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical
protein Y67A10A.6 protein.
Length = 447
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 493 NFDSIHISFALHYLCAPWTTARSAEPSSAASDTA 392
NFD I S ++HY+ +T ARS ++ A++ A
Sbjct: 66 NFDRIEPSTSIHYILESFTEARSTSEATEAANFA 99
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/95 (25%), Positives = 34/95 (35%)
Frame = -1
Query: 478 HISFALHYLCAPWTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTS 299
HI + Y CA TT + +S + T T ++T + PT T +T+
Sbjct: 236 HIKYDTSYTCASTTTVST---TSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTPTTTTT 292
Query: 298 RVHATGTNLTAAIHSIGQGTAWARHRPLTTQTAIT 194
T T T + P TT TA T
Sbjct: 293 TPTTTTTESTTTETTSTTTPTTTTTAPTTTTTAST 327
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.7 bits (61), Expect = 2.7
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = -1
Query: 439 TTARSAEPSSAASDTAVP--TAVVRAGY---SSTVAVHISALPTRC*TISTSRVHATGTN 275
+TA S+ P AS T+VP T +G SST+ S+LP+ T +T +T TN
Sbjct: 749 STAGSSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMT-NTGSTGSTVTN 807
Query: 274 LTAAIHSIGQGTAWARHRPLTTQTA 200
A+ + G + P+ + TA
Sbjct: 808 QLASSSTYGASST----EPIASSTA 828
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = -1
Query: 427 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGTNLTAAIHSIG 248
S+ ++ AS T PT+ + SS + + T T+ST+ ++G + + +IG
Sbjct: 483 SSTVTTVASSTIAPTSSQES--SSIASSSAPSQSTTVITVSTTATVSSGQSTSTFGTTIG 540
Query: 247 QGTAWARHRPLTTQ 206
QG+++ TTQ
Sbjct: 541 QGSSFGSSTIQTTQ 554
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 439 TTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISALPTRC*TISTSRVHATGT 278
+TA S+ P S T+VP++ S+ V S + ++S+S V TG+
Sbjct: 1501 STAGSSSPQPTVSSTSVPSSTGATSSGSSTTVGSSTVGATQTSVSSSTVPNTGS 1554
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 188 PVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPC 286
P+ C +GC G G CG CG G C
Sbjct: 751 PMLMCGVGCDGAACGACGACG-ACGACGGCGGC 782
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = -3
Query: 467 CVTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRL 363
C F R K + C +RY +H C R+
Sbjct: 26 CAAFFRRYFHSKKSVISCTCQIRYQNSHPCRECRI 60
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 479 SHFFCVTLFMRTMDHSKKRRALQCSLRYSR 390
SH FC+ + + D KKR L C +YS+
Sbjct: 35 SHTFCL-MCLSKHDQRKKRHCLICKTKYSK 63
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = -3
Query: 467 CVTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRL 363
C F R K + C +RY +H C R+
Sbjct: 28 CAAFFRRYFHSKKSVISCTCQIRYQNSHPCRECRI 62
>AF016681-15|AAB66168.1| 172|Caenorhabditis elegans Hypothetical
protein F22E5.2 protein.
Length = 172
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 439 TTARSAEPSSAASDTAVPTAVVRAGYSSTVAVH 341
TT S P T +PTA G+SS +H
Sbjct: 130 TTDSSTVPQLVTETTEIPTATTTPGWSSKTELH 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,009,578
Number of Sequences: 27780
Number of extensions: 215683
Number of successful extensions: 639
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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