Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d24
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical pr...    30   0.86 
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    28   3.5  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    28   3.5  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical
           protein C44H9.2 protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 203 LKWNRRGLEANWNL-QESSRLGERVADLVKHYYV*W 99
           +K+ R   E NWNL  +SSR    +  L+KHY+V W
Sbjct: 558 IKFLRYVSEPNWNLLPDSSRTVIDMPVLMKHYFVGW 593


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 236 FGSWMFGKGCHRTQNLTKKPQNELK 310
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 236 FGSWMFGKGCHRTQNLTKKPQNELK 310
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 258 LPNIQLPNFLYINP-INASTKVEPP 187
           L N+  P F+YINP I A    EPP
Sbjct: 244 LANMASPEFIYINPLIVARNSEEPP 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,048
Number of Sequences: 27780
Number of extensions: 173454
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)