Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d23
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   4.1  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   5.5  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    25   5.5  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        25   7.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   9.5  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.5  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   9.5  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 160 SEYRTLPTYEKGLYEEVFKRHYSLHDNELLKCRW 261
           SE+  L  YEK  ++E+ K H       L+ C+W
Sbjct: 274 SEFEALQAYEKEKFQEMIK-HVKDAGANLVICQW 306


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 251 NADGHSTRNIWRVGCLRPSSFPT*EIFTSTTAPFDS 358
           N+ G S R+   +  L+ S   T  + +STT PFDS
Sbjct: 153 NSAGLSLRSASALDVLKNSGPATTSLLSSTTYPFDS 188


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 215 RGTILCTITSC*NADGHSTRNIWRVG-CLRPSSFPT*EIF 331
           RG    ++  C NADG     +W VG    P SF    IF
Sbjct: 205 RGKAKVSLIMCCNADGSERLPLWIVGYAQNPRSFEQCGIF 244


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 103 IKRKKPYDHVNEEIAKRIGSEYRTLPTYEKGLY 201
           +K+     H+NE++A   G +  T  +Y  G+Y
Sbjct: 62  VKKVSLAKHMNEKMANEAGGKIFTYGSYRLGVY 94


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 91  DCAEIKRKKPYDHVNEEIAKRIGSEYRTLPTYEKGLYEEVFKRH 222
           DC   K    Y H  + + + I S   +    EKG Y +V K H
Sbjct: 429 DCLIDKVNGTYRHCCQALDEIINSVKSSQNMKEKGFYSDVIKLH 472


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 181 TYEKGLYEEVFKRHYSLHDNELLKCRWTQ 267
           TY   LY+ +F+      +NE L   W +
Sbjct: 54  TYNLELYQSLFEEFQDCFENEQLDVEWVE 82


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1010

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 19/86 (22%), Positives = 37/86 (43%)
 Frame = -2

Query: 357  ESNGAVVEVKISHVGKLEGRKHPTLQMFLVLCPSAFQQLVIVQRIVPLKHFFVKTFFVRR 178
            +SN A  E + S   +L       L++F    P AF  + IV R+  + ++ ++     +
Sbjct: 775  QSNLAAAERQASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQALCGPK 834

Query: 177  QRSVLAADSLRYFFINMIIWFFPFDL 100
              ++   D  +Y F    +    FD+
Sbjct: 835  CSNLKVEDPTKYHFNAKTLLSIIFDV 860


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 52  YFYMEYT-LKDIYADCAEIKRKKPYDHVNEEIAK 150
           Y +  Y  L D Y  C+  + K+P+    EEI K
Sbjct: 11  YSHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKK 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,121
Number of Sequences: 5004
Number of extensions: 43084
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)