Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d22
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    29   0.52 
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    27   2.8  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   6.4  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.5  

>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -2

Query: 533 QNKLCNPLNILLEGKVLCNCIFLSGKMNRAMDMADYYNRVGIFQSRKDTLNRNR 372
           + + C+P    +  ++  NC+  +G+   A  + + ++ V +F  RK+   RNR
Sbjct: 147 RRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLMEDHDCVALFSLRKEEHERNR 200


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 524 LCNPLNILLEGKVLCNCIFLSGKMNRA 444
           + N   +   G+ L NCIFLS +MN A
Sbjct: 245 VANDATLSTLGRKLPNCIFLSDEMNHA 271


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 431 DYYNRVGIFQSRKDTLNRNRSLDIHRILKKLEDRYYSCAYSISCRSKP 288
           DY  R  +   R D    N     HR L+ L+DR+YS +  I     P
Sbjct: 116 DYDLRFFVIADRYD----NEKYKKHRTLEDLKDRFYSVSRKILLARNP 159


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 258 LSSSFFIFFEGLEPTMAMFD 199
           L  S F+FF G+ P  A+FD
Sbjct: 76  LLQSNFLFFSGITPIRAIFD 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,231
Number of Sequences: 5004
Number of extensions: 43811
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)