Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d22
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    31   0.93 
03_03_0199 - 15363680-15363739,15363879-15364070,15364154-153646...    29   2.8  
04_03_1020 - 21761297-21761555,21761630-21761739,21762402-217626...    28   5.0  
02_01_0094 - 667361-668962                                             28   5.0  
02_01_0093 + 655420-657021                                             28   5.0  
11_06_0289 - 21969248-21973516                                         27   8.7  
11_06_0185 + 21018045-21022307                                         27   8.7  

>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 509  NILLEGKVLCNCIFLSGKMNRAMDMADYYNRVGIFQSRKDTLNRNRSLDIHRILKKLED 333
            N++    +LC  I   G +   + M   Y+ V +  SRKD L  +    +   L+K+ D
Sbjct: 1159 NLVRNSNILCEDIVSQGAIQALLKMVSSYSTVALSPSRKDVLTESPLKIVLFALRKMCD 1217


>03_03_0199 -
           15363680-15363739,15363879-15364070,15364154-15364605,
           15364699-15365101
          Length = 368

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 473 CSCKVPCPPTKCLVDCTTCFGLKIKLNKKPKFEPSPVE 586
           CS  +P  P   ++ C  C+G+     +  +  P+PVE
Sbjct: 25  CSASLPAMPGARVIQCAQCYGVTRVGGRGRRRHPNPVE 62


>04_03_1020 -
           21761297-21761555,21761630-21761739,21762402-21762635,
           21762710-21762817,21762910-21762969,21763549-21763624,
           21763710-21763870,21764485-21764547,21764657-21764744,
           21765062-21765592,21766344-21766783
          Length = 709

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 387 AESKQKPRHPPHFKETGRSVLLLCLQ 310
           A SK+ P  P  F E G+S L +CL+
Sbjct: 517 ANSKEIPEIPDSFSEEGKSFLQMCLK 542


>02_01_0094 - 667361-668962
          Length = 533

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 281 IVQVCCGMKCCKHKSNTDLPVSLKCGGCRGFCFDSACPSCFGI 409
           I+Q   G  C      + LP S+ C     FC  +AC + FG+
Sbjct: 358 ILQTAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGV 400


>02_01_0093 + 655420-657021
          Length = 533

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 281 IVQVCCGMKCCKHKSNTDLPVSLKCGGCRGFCFDSACPSCFGI 409
           I+Q   G  C      + LP S+ C     FC  +AC + FG+
Sbjct: 358 ILQTAGGAFCLLLGRASTLPTSVVCMVLFSFCAQAACGAIFGV 400


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 431 DYYNRVGIFQSRKDTLNR-NRSLDIHRILKKLE 336
           DYY + GI++S+K  L +  R++    I +KL+
Sbjct: 307 DYYKKCGIYRSKKSVLGKIKRNIKKMNIYEKLD 339


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -2

Query: 431 DYYNRVGIFQSRKDTLNR-NRSLDIHRILKKLE 336
           DYY + GI++S+K  L++  R++    I +KL+
Sbjct: 307 DYYKKCGIYRSKKGVLDKIKRNIKKMNIYEKLD 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,132
Number of Sequences: 37544
Number of extensions: 270214
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)