Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d22
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   3.3  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   4.3  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   7.5  

>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 293 CCGMKCCKHKSNTDLPVSLKCGGCRG 370
           CC  KC   K N  LP  +   G +G
Sbjct: 93  CCLPKCFAEKGNRGLPGPMGLKGAKG 118


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 215  LWQCLINQTYYVPYPIVLWLINTCRWY*GFFLNYLVSDRLNR 90
            +++ LI++T++  +    W   T     G +  YL+SD +NR
Sbjct: 2170 IYEGLISKTFFTAH----WQKATSPLRNGIYTEYLMSDNMNR 2207


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +2

Query: 476 SCKVPCPPTKCLVDCTTC 529
           SC  P   T C++ C  C
Sbjct: 18  SCAEPLEATGCIISCAYC 35


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 569,832
Number of Sequences: 2352
Number of extensions: 11991
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)